Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G07170 793 / 0 ARM repeat superfamily protein (.1) AT4G27060 213 / 7e-58 CN, SPR2, TOR1 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) AT1G27210 199 / 2e-54 ARM repeat superfamily protein (.1) AT1G50890 194 / 1e-51 ARM repeat superfamily protein (.1) AT5G62580 156 / 9e-40 ARM repeat superfamily protein (.1) AT1G59850 149 / 5e-38 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G421200 [exp] 248 / 1e-69 AT4G27060 884 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Potri.011G136700 [exp] 244 / 2e-68 AT4G27060 855 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Potri.008G192100 [exp] 222 / 3e-62 AT1G27210 474 / 3e-160 ARM repeat superfamily protein (.1) Potri.010G038900 [exp] 201 / 4e-55 AT1G27210 480 / 9e-163 ARM repeat superfamily protein (.1) Potri.012G074400 [exp] 137 / 2e-33 AT5G62580 332 / 9e-106 ARM repeat superfamily protein (.1) Potri.015G069200 [exp] 132 / 8e-32 AT5G62580 366 / 9e-119 ARM repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027590 [exp] 1013 / 0 AT2G07170 702 / 0.0 ARM repeat superfamily protein (.1) Lus10008545 [exp] 833 / 0 AT2G07170 550 / 0.0 ARM repeat superfamily protein (.1) Lus10040047 [exp] 213 / 5e-57 AT4G27060 801 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Lus10011149 [exp] 206 / 3e-55 AT4G27060 911 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Lus10043053 [exp] 201 / 2e-53 AT4G27060 891 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Lus10010730 [exp] 190 / 3e-51 AT1G27210 459 / 8e-155 ARM repeat superfamily protein (.1) Lus10033129 [exp] 155 / 2e-39 AT5G62580 507 / 8e-174 ARM repeat superfamily protein (.1) Lus10036647 [exp] 150 / 1e-37 AT5G62580 496 / 2e-169 ARM repeat superfamily protein (.1) Lus10019616 [exp] 125 / 2e-31 AT4G27060 254 / 2e-78 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Lus10036675 [exp] 113 / 5e-26 AT1G27210 353 / 3e-115 ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G079500.1 pacid=42767957 polypeptide=Potri.006G079500.1.p locus=Potri.006G079500 ID=Potri.006G079500.1.v4.1 annot-version=v4.1 ATGAAGGAGGCACATTCCCAATTGAAAACTAGAGGGTCCTCTAGGGTTAATGCACAGCAAGTGGTTTTTGAGCTTAAGCAAAAGGTGGTTGTTGCATTGA AAAAGCTTGCTGATCGAGATACTTGTCAAATTGGTGTTGATGAGCTTGAGAAAATGGCTGAGTGTTTAACCCCAGATGGGGTTTCGCCGTTCCTTTCGTG TATTTTGGATACGGATAAGGAGCAGAAGAGTGCGGTTAGGAAGGAGTGTGTTAGGTTGATAGGTACATTGGTGAATTTTCATGAGGGTTTAATGGGACCC CATTTGAGTAAGATGGTTGCTAGTGTTGTTAAGAGGCTTAAGGATCCGGATTCGGTTGTTAGGGATGCTTGTGTTGAGACGATGGGTATTTTGGCTGCTA AGTTGAGTAACCATGGGGATGAGAGTGATGGGGTCTTTGTTATGTTGGTCAAGCCGCTTTTTGAAGCTTTGGGTGAGCAGAATAAGCAGGTGCAGTCGGG TTCTGCGTTGTGCTTGGCAAGGGTCATTGATAATTCTCATGATCCTCCAGTTTCTATTCTGCAGCGGATGTTGGCTCGGACAATAAAGTTGCTCAAGAAT CCACATTTCATGGCAAAACCAGCAGCAATTGAGTTGAACAGAAGCATCATTCTGGCGGGAGGTGCTCCATCACAAAATATTCTATCCGCCGCAATGACTA GCATCCAAGAAGCTCTCAAAAACAGTGATTGGACAACACGCAAAGCAGCTTCTGCAGCATTGGGAGAAATTGCTTCAAGTGGTGGATCCTGCTTGGGACC TTTTAGGGCTTCCTGCATCCGATATCTTGAATCATGCCGATTTGACAAGGTGAAACCAGTTAGGGACGCAGTACAGCATGCCCTTCAGTACTGGAAAAGT CTTCCAGGGTCTGATACCCCTGAACCTTCTGAAACTGGTTCTTCTATAAAAGAAAACTTCTATGGAGGTGCCTACAGTGATGTCACGAGTGCAAGTGATG TTGTGCGGAAGGAGGCCACACTAAAAAATGTAGTTTCAGACTCGACTAAAAGAAGGGCTCCTTTATCAGCTACAAAAGCATGTCAAAATTATGTGGACTC TCATCATCCCAAAACAGATAATTGGCATATTGAAATTTCTGTCCCAAAAAAGCATAACATTTCTTTGGCAGATCTTCAAAATGAGGAATCAGAGGGTAGT TCCATTACCAAAACATTAGAAAGGATGAGTGCTGATGTAATGAGTCCTCCAGATATTGGATGTGAATATGTGCCCATGGATGACAAGCAAGACTCTTCAT CTGTGTCTAACCTAGTTACTAACAACTTTGAGACCAAGTTTGTCACAGTTTCTCACGGCTTGCTTGAGGAGGGCAGTTCATTCAAGCCGAGGGGTCGGAA TCAGCAGTTTTCATCTGAAGGGATAAACAGTGAGGCGCAAATATACTCTGCACAGATGCGAGATCGTAGAAGTATCGACTCTGCAGTTACAGAGAACAGT TTCCAAACATTGCATGGATGTTGTTCACAGGTAGCCAGTGAAATGGCTTGCATACGGAAACAACTTTTGGAGATGGAAAACAAGCAGTCGAATTTAATGG AACTACTACAGGTGTTTTCAACAGGCGTAATGGATAACTTGTCTATATTACAGTCTAAAGTGTCTGGTTTAGAACATGAAGTAGATAGAATAGGTCAAGT TCTTGTGCAAGATGGGAGACGTTCTGATTCAGCTATCTCTAGACTTATGAAGCAGAATCAAACTGTTTCTTCTCCCAGACCTTCAACGTACACTCCTCGG CCATCTGTAGATATTCGCAATAGACAATCTTCACTGCTTTCTGCAAAGAATTCTGATATATGGGAGGGAAAAAATTTCAGCAGGAGCAGACCAATCAACC CTGCTAAAAATGGCACAGAGATGTGGGCTAATCCTACTGTAAAGACTAGTAGGAATGCTATAGGAAAGGACATGCAAAAACGCTCTGGGCAGGGGGCACA GAACATGGGTCAGGCGAGAAAAGTTGATTCTGTCTTTGCTCCACTCTCAAGTGCCAATTCTAGACAAAGTGGTCCAGAGAGCAAAAATTGTGTGTGGCAA TGTGTGAAAGACTTTTTATGTGAAGGTGACCTAGAGTCTGCCTATGAGGAAGCTCTCTGTTCCATTGATGAACTTGTTCTTATTGAGCTTATTGATAGAA CTGGTCCTGTTCTAGAAAGTTTGTCCTCCAAGACTGCTGGTGATGTTCTTAGCATTTTGGCATCGTACTTCTTAGAGCAGAGGTTTACAAACTCAATAAT CCCTTGGTTGCAGCAGGTGGTGGACTTGAGCACAATCAATGGACCTGATTATATTATTCTCTCTGCAAAAACAAAAAGAGAATTCTTTTGTGCAATCCAG GAGGCTGTAAGTATGGAATTTTCCAATCCAGCTGAGAGAAGATCCATCTCTCAACTTGCCATGAAGTTGCGTCAACTATGGGGGAAGAGCTCCTGA
AA sequence Show only first row Show all	>Potri.006G079500.1 pacid=42767957 polypeptide=Potri.006G079500.1.p locus=Potri.006G079500 ID=Potri.006G079500.1.v4.1 annot-version=v4.1 MKEAHSQLKTRGSSRVNAQQVVFELKQKVVVALKKLADRDTCQIGVDELEKMAECLTPDGVSPFLSCILDTDKEQKSAVRKECVRLIGTLVNFHEGLMGP HLSKMVASVVKRLKDPDSVVRDACVETMGILAAKLSNHGDESDGVFVMLVKPLFEALGEQNKQVQSGSALCLARVIDNSHDPPVSILQRMLARTIKLLKN PHFMAKPAAIELNRSIILAGGAPSQNILSAAMTSIQEALKNSDWTTRKAASAALGEIASSGGSCLGPFRASCIRYLESCRFDKVKPVRDAVQHALQYWKS LPGSDTPEPSETGSSIKENFYGGAYSDVTSASDVVRKEATLKNVVSDSTKRRAPLSATKACQNYVDSHHPKTDNWHIEISVPKKHNISLADLQNEESEGS SITKTLERMSADVMSPPDIGCEYVPMDDKQDSSSVSNLVTNNFETKFVTVSHGLLEEGSSFKPRGRNQQFSSEGINSEAQIYSAQMRDRRSIDSAVTENS FQTLHGCCSQVASEMACIRKQLLEMENKQSNLMELLQVFSTGVMDNLSILQSKVSGLEHEVDRIGQVLVQDGRRSDSAISRLMKQNQTVSSPRPSTYTPR PSVDIRNRQSSLLSAKNSDIWEGKNFSRSRPINPAKNGTEMWANPTVKTSRNAIGKDMQKRSGQGAQNMGQARKVDSVFAPLSSANSRQSGPESKNCVWQ CVKDFLCEGDLESAYEEALCSIDELVLIELIDRTGPVLESLSSKTAGDVLSILASYFLEQRFTNSIIPWLQQVVDLSTINGPDYIILSAKTKREFFCAIQ EAVSMEFSNPAERRSISQLAMKLRQLWGKSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G07170			ARM repeat superfamily protein...		Potri.006G079500 [exp]	0	1
AT5G65360			Histone superfamily protein (....		Potri.003G207700 [exp]	1.73	0.9098
AT4G29910		EMB2798, ORC5, ...	EMBRYO DEFECTIVE 2798, origin ...		Potri.001G135975 [exp]	2.44	0.8933
AT5G65360			Histone superfamily protein (....		Potri.003G210100 [exp]	3.00	0.8899	HTR902
AT1G67590			Remorin family protein (.1.2)		Potri.010G056800 [exp]	5.29	0.8600
AT3G27060		ATTSO2, TSO2	TSO MEANING 'UGLY' IN CHINESE ...		Potri.001G329700 [exp]	8.83	0.8213
AT5G65360			Histone superfamily protein (....		Potri.003G207852 [exp]	10.39	0.8672
AT5G62410		TTN3, ATSMC4, A...	TITAN 3, structural maintenanc...		Potri.003G108400 [exp]	10.48	0.8804	CPE902,Pt-SMC2.2
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Potri.008G088300 [exp]	10.95	0.8205	PtEXPA4,EXPA1.2
AT4G31360			selenium binding (.1)		Potri.018G004901 [exp]	11.83	0.8528
AT2G47920			Kinase interacting (KIP1-like)...		Potri.014G135000 [exp]	12.72	0.8157

Compare expression of checked genes

Potri.006G079500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.