Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G07180 539 / 0 Protein kinase superfamily protein (.1.2) AT5G01020 424 / 1e-145 Protein kinase superfamily protein (.1) AT2G28930 382 / 3e-129 APK1B protein kinase 1B (.1.2.3) AT5G56460 378 / 6e-128 Protein kinase superfamily protein (.1) AT2G05940 378 / 5e-127 RIPK RPM1-induced protein kinase, Protein kinase superfamily protein (.1) AT1G07570 371 / 4e-125 APK1A Protein kinase superfamily protein (.1.2.3) AT5G02290 370 / 6e-125 NAK Protein kinase superfamily protein (.1.2) AT2G39660 366 / 2e-123 BIK1 botrytis-induced kinase1 (.1) AT5G15080 369 / 5e-123 Protein kinase superfamily protein (.1) AT2G26290 365 / 3e-122 ARSK1 root-specific kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G149100 [exp] 795 / 0 AT2G07180 565 / 0.0 Protein kinase superfamily protein (.1.2) Potri.016G143200 [exp] 424 / 3e-145 AT5G01020 655 / 0.0 Protein kinase superfamily protein (.1) Potri.006G113600 [exp] 420 / 6e-144 AT5G01020 664 / 0.0 Protein kinase superfamily protein (.1) Potri.006G219300 [exp] 388 / 4e-131 AT2G05940 536 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.009G031300 [exp] 386 / 6e-131 AT2G28930 603 / 0.0 protein kinase 1B (.1.2.3) Potri.001G240400 [exp] 385 / 1e-130 AT1G07570 590 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.001G002300 [exp] 383 / 3e-130 AT5G56460 608 / 0.0 Protein kinase superfamily protein (.1) Potri.016G094300 [exp] 382 / 2e-129 AT1G07570 540 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.010G203400 [exp] 380 / 1e-128 AT2G28930 540 / 0.0 protein kinase 1B (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040588 [exp] 588 / 0 AT2G07180 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10027589 [exp] 522 / 0 AT2G07180 545 / 0.0 Protein kinase superfamily protein (.1.2) Lus10008546 [exp] 510 / 7e-180 AT2G07180 534 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036762 [exp] 411 / 7e-140 AT5G01020 672 / 0.0 Protein kinase superfamily protein (.1) Lus10023794 [exp] 383 / 2e-130 AT5G02290 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10024391 [exp] 382 / 3e-129 AT5G02290 563 / 0.0 Protein kinase superfamily protein (.1.2) Lus10010835 [exp] 379 / 4e-128 AT5G02290 561 / 0.0 Protein kinase superfamily protein (.1.2) Lus10030668 [exp] 377 / 7e-126 AT5G15080 723 / 0.0 Protein kinase superfamily protein (.1) Lus10005255 [exp] 375 / 2e-125 AT5G15080 720 / 0.0 Protein kinase superfamily protein (.1) Lus10000954 [exp] 372 / 2e-125 AT1G07570 535 / 0.0 Protein kinase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.006G079600.2 pacid=42767742 polypeptide=Potri.006G079600.2.p locus=Potri.006G079600 ID=Potri.006G079600.2.v4.1 annot-version=v4.1 ATGAAAGGCAATAAATCAAGATTTGGTCTAAGGTCAAGATTAATGGGGATTTGTTTCAGTACTGATAATGACAAAATCCCACAAGAACGACAGCGGTTAT CTTCTAAGGGAAACCAAGGGCACGACTACGATCACTCTCCGACTATATCAAATGCGCCGGAGGTGGTTGAGATCAAAAGAACAAGAAGCATCCCTTCAAT TCACAAGAATGTCACAGATCTTCGTAATAGTCCTGGTTATGGTAATGTTGATATCTTTACATACGAGGAAATGACATTGGCCACTAAGCATTTCCGACCA GATTATATTCTTGGTGAGGGTGGATTCGGAGCTGTTTATAAAGGAGTCTTGGACAAGAGTGTAAGGCCTGGTTACAAGACCACATATGTTGCCATTAAGG AGCTTAATCCTGATGGGTTACAAGGTGACAGAGAATGGCTGGCAGAAGTCAACTATTTAGGTCAACTCAGTCACCAAAATCTTGTGAAGCTCATTGGGTA TTGCTGTGAAGATGAACACAGGCTGTTGGTCTATGAATACATGGCAAGTGGGAGCCTGGAAAAACATCTTTTTCGCAGAGTGGGTTGTACTTTGACATGG TCAAAAAGAATGAGGATTGCTTTAGATGCTGCAAAAGGACTTGCTTTTCTTCATGGTGCAGAAAGATCTGTCATATACCGTGATTTCAAGACATCAAATA TCTTGCTGGATTCGGATTTTAATGCAAAACTTTCAGATTTTGGACTTGCAAAAGACGGGCCGATGGGAGATCATACTCATGTGTCAACACGTGTCATGGG GACATATGGATATGCTGCTCCAGAATATGTAATGACTGGGCATTTAACGGCTCGAAGTGATGTTTATGGGTTTGGGGTAGTGCTACTTGAGTTGCTTCTT GGAAGGAGAGCAATGGACAAGAGCAGGCCTAGCCAAGAACACAACCTTGTTGAGTGGGCCCGCCCTCTCTTGAACCACAACAAGAAGGTTCTGAGAATCT TAGATCTCAGAATGGAAGGGCAGTACTCATCTAGAATTGCAATGAAAGTAGCCAATTTGGCATCCCAATGCCTTAGCCAAAATCCGAAAGGGAGACCCCT CATGAATCAGGTGGTTGAATTACTTGAGAGTATCCAGTCAAAGGATGAAGCTGCCGTGTTGGAAACCAGTGGGAGAGATGTAACCCTATATGAAGTCCCA AGGCGCTCTCCATACACTCCAGAGAAAGGAAGAAATCAAACTAGAAGTCATGATCATAGAGAAGGGGAACCTTCTCCTTACACTCCGGATGAAGAAGGGA ACCGGACTAAAAGTCTTGAGCATAGAGAAGGGGAAACTCCTCACACTCCTTCAGAGAAAGAAAGAAACAAAACTAGAAGTCATGATCATAGAGAAGGGGA ACCTCGAAGGAGGAGCAAACCTGCAAATGTAGGGAGCAGAAGTGAGCCCCCAACTGAGAGTGATCTGATTAGCGCTCATGTTGGAATGTTGAATCCTATG ACTGAAACGCATCTACATTGA
AA sequence Show only first row Show all	>Potri.006G079600.2 pacid=42767742 polypeptide=Potri.006G079600.2.p locus=Potri.006G079600 ID=Potri.006G079600.2.v4.1 annot-version=v4.1 MKGNKSRFGLRSRLMGICFSTDNDKIPQERQRLSSKGNQGHDYDHSPTISNAPEVVEIKRTRSIPSIHKNVTDLRNSPGYGNVDIFTYEEMTLATKHFRP DYILGEGGFGAVYKGVLDKSVRPGYKTTYVAIKELNPDGLQGDREWLAEVNYLGQLSHQNLVKLIGYCCEDEHRLLVYEYMASGSLEKHLFRRVGCTLTW SKRMRIALDAAKGLAFLHGAERSVIYRDFKTSNILLDSDFNAKLSDFGLAKDGPMGDHTHVSTRVMGTYGYAAPEYVMTGHLTARSDVYGFGVVLLELLL GRRAMDKSRPSQEHNLVEWARPLLNHNKKVLRILDLRMEGQYSSRIAMKVANLASQCLSQNPKGRPLMNQVVELLESIQSKDEAAVLETSGRDVTLYEVP RRSPYTPEKGRNQTRSHDHREGEPSPYTPDEEGNRTKSLEHREGETPHTPSEKERNKTRSHDHREGEPRRRSKPANVGSRSEPPTESDLISAHVGMLNPM TETHLH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G07180			Protein kinase superfamily pro...		Potri.006G079600 [exp]	0	1
AT5G01075			Glycosyl hydrolase family 35 p...		Potri.014G017600 [exp]	1.73	0.8449
AT3G47570			Leucine-rich repeat protein ki...		Potri.008G033900 [exp]	3.46	0.8191
AT4G34215			Domain of unknown function (DU...		Potri.001G300800 [exp]	3.87	0.7630
AT3G01860			unknown protein		Potri.008G176300 [exp]	4.47	0.8154
AT3G61640		AGP20, ATAGP20	arabinogalactan protein 20 (.1...		Potri.012G032000 [exp]	4.89	0.7716
AT3G51000			alpha/beta-Hydrolases superfam...		Potri.004G039700 [exp]	6.32	0.7928
AT1G62400		HT1	high leaf temperature 1, Prote...		Potri.015G075200 [exp]	6.63	0.7533
AT5G11730			Core-2/I-branching beta-1,6-N-...		Potri.018G059100 [exp]	6.92	0.7973
					Potri.001G121350 [exp]	8.66	0.8135
AT1G06330			Heavy metal transport/detoxifi...		Potri.018G150200 [exp]	9.79	0.7338

Compare expression of checked genes

Potri.006G079600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.