Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24350 75 / 6e-14 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT3G12640 64 / 1e-10 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT5G65260 53 / 1e-07 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G27330 49 / 6e-07 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G51120 49 / 2e-06 PABN1, ATPABN1 polyadenylate-binding protein 1 (.1.2.3) AT3G01210 43 / 0.0003 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G18610 44 / 0.0004 ATNUC-L2, PARLL1, ATRANGAP1 PARALLEL1-LIKE 1, nucleolin like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G145050 [exp] 95 / 4e-22 AT2G24350 107 / 4e-27 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.009G063800 [exp] 76 / 4e-14 AT3G12640 418 / 6e-138 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G269200 [exp] 73 / 2e-13 AT3G12640 432 / 3e-143 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.005G073200 [exp] 55 / 3e-08 AT5G10350 292 / 2e-101 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Potri.012G145100 [exp] 56 / 6e-08 AT2G24350 72 / 2e-13 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.007G095800 [exp] 54 / 8e-08 AT5G10350 285 / 3e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Potri.012G115100 [exp] 54 / 8e-08 AT5G65260 271 / 5e-93 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.015G110800 [exp] 53 / 1e-07 AT5G51120 266 / 1e-90 polyadenylate-binding protein 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037701 [exp] 76 / 5e-14 AT3G12640 412 / 2e-135 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10015696 [exp] 72 / 8e-13 AT3G12640 417 / 1e-136 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10032510 [exp] 53 / 1e-07 AT5G65260 278 / 2e-95 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10032509 [exp] 52 / 1e-06 AT5G07440 771 / 0.0 glutamate dehydrogenase 2 (.1.2.3) Lus10043008 [exp] 47 / 1e-05 AT5G65260 278 / 4e-96 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10011560 [exp] 43 / 0.0006 AT4G14300 94 / 5e-28 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.006G079800.2 pacid=42766925 polypeptide=Potri.006G079800.2.p locus=Potri.006G079800 ID=Potri.006G079800.2.v4.1 annot-version=v4.1 ATGTTGAGCAGCAAAAACCCAAAATCAGAATCCGGAAAGCAGCAGCTGCTCTCTAAAATACTGAGAGCTTCGGTTTCGGAAAAGCTTAAGGACTTACTTG GAGACATCCCAGAACTAAATGAAGAAGAAGATAATAATGATGTCATCCAAGACCTATCTGAGTATGTAACTCTGCTTATTTCTAATGGGAAGACACAAAA TCAGGCAAAAATCCAGTTGGAGCCATTTCTTGGTGATGCCAATACTGCCCTTTTTGTTTCTTGGCTCTGGGAATTTCTTTCCAAAAATTATATGAATCCG AATGCATCATCAGATGTTGAAAATGCCACTGGTGATGGTAATGCTACTGGCAAGAAGCAGGCAAGCAAGAGTAGTCTTATAAAGCCTTCAGATGATTCTA AGCAACTTTCCGAAGGTGTCAAGTGCCCGGATGACGACGACTTATCTTCGGAGTCTTTGGAGGAGGGAGAGCTGCCAAGAACTGACCATGAATCTATCAA AGAGTTTGAAGAGTCGGAAATTGGTTATGGGGAGTCCTTAAAGTGCACATCTTCTAGAGTGGAGGCATGTAGTGGAGATTTGGGTGTTGGTGGTGAAGAA AGCACCCCGCACAAGAAGGTTTATACAAGAAGCCTTCGGTGTAAGAAACTTGATGTGGCTAATGTTGCTGGGAGGAGGCTTTTCACTAGGGCAGCAGCTG ATGCAATACTTCATCAGCGTGCAAGGGTGCATGGTACCGTGTGGGACAGACTGGGAAAGCTACCTGAAGGTGGAAATTGTGCAAATGCTGACATGAAAGG CGTTGAAAAGATCAAAGAGGAAGTATTTAAATGTTATGGAGAAAGTACCGAACGAAATCATTCAACACGTTCTCTTCATGGTCGTAAATTCTGTGGAAGA TTGTCAGAAAATTTTGACATCAAGACTGGAGCGAGTAAAGATGGTCACAAGAGACAATTCAGTGATATAAATTATCATCAATCTGGTGTTTCCGATTCTA TGGATGGGGAAGAAGCATTTATTAAAAAGGCGAGAAGATTGTTGCCTGAAGAAGATAATGGTGTGCTGGGTGAGAATAGTGTTTCTTCAGGAGCTGAAAC ACCGAAAAGCCAAAAAATGGGTAATGCATCTAGCTCTAATGCTTCGACTAGTTCAAAGTTAAAGAAAATGCCCAAAGAAAGATTGAGTGGGGAGATTTTG GAGTCTCCTGTGACTGCAGTTTCATGTAGTACTCCTGTGACTGAGAAACCTTCTTGTAAGGACAATAGCAATGCAACTGCCAATCTCAAGCCCGTGCACA ATCAACTGATGGATATGAAACTAAGACTGGAGCATCTTGAAACGGAAATTGTTAAGCTCCAATCGAAGAACGTAGAGAAAAAAGAACAAAGTTCATCTAA ATCTGGTTCCATTTATCATCTCGAGGGGGATGAATCAAGAACTGTAGTCGTGAAAAATGTGCATATTGCAGCAACTAGAGAAGCCCTAATATCCTACTTT GCTAAGTGTGGAGCTGTCGATAGAGTTATTAAACTGACTGACACAGTTGGCATTAAACAAAAAGCGTATGCCTATGTTACTTTTACCAGCAAGCACTCGG CAGACAAAGCACTGGCATTGAGTGGGGAATCTTTCTTTTCCCAGATCATATGGGTCAGAAGGACAGGGAAGCTATTAGAGAAGTCCAGATGCACCCCTCA TATTGGAAGGGGAGACTGTTCCACCACTACTGCTCCCATCTACAGTGGCAGCAGCAGCAGAAGGCCTACAAAGTATACGCTTTAG
AA sequence Show only first row Show all	>Potri.006G079800.2 pacid=42766925 polypeptide=Potri.006G079800.2.p locus=Potri.006G079800 ID=Potri.006G079800.2.v4.1 annot-version=v4.1 MLSSKNPKSESGKQQLLSKILRASVSEKLKDLLGDIPELNEEEDNNDVIQDLSEYVTLLISNGKTQNQAKIQLEPFLGDANTALFVSWLWEFLSKNYMNP NASSDVENATGDGNATGKKQASKSSLIKPSDDSKQLSEGVKCPDDDDLSSESLEEGELPRTDHESIKEFEESEIGYGESLKCTSSRVEACSGDLGVGGEE STPHKKVYTRSLRCKKLDVANVAGRRLFTRAAADAILHQRARVHGTVWDRLGKLPEGGNCANADMKGVEKIKEEVFKCYGESTERNHSTRSLHGRKFCGR LSENFDIKTGASKDGHKRQFSDINYHQSGVSDSMDGEEAFIKKARRLLPEEDNGVLGENSVSSGAETPKSQKMGNASSSNASTSSKLKKMPKERLSGEIL ESPVTAVSCSTPVTEKPSCKDNSNATANLKPVHNQLMDMKLRLEHLETEIVKLQSKNVEKKEQSSSKSGSIYHLEGDESRTVVVKNVHIAATREALISYF AKCGAVDRVIKLTDTVGIKQKAYAYVTFTSKHSADKALALSGESFFSQIIWVRRTGKLLEKSRCTPHIGRGDCSTTTAPIYSGSSSRRPTKYTL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G24350			RNA binding (RRM/RBD/RNP motif...		Potri.006G079800 [exp]	0	1
AT3G19620			Glycosyl hydrolase family prot...		Potri.001G354250 [exp]	17.60	0.6041
AT4G20040			Pectin lyase-like superfamily ...		Potri.003G075500 [exp]	26.09	0.6312
AT5G23120		HCF136	HIGH CHLOROPHYLL FLUORESCENCE ...		Potri.005G092950 [exp]	37.52	0.5445
AT3G16380		PAB6	poly(A) binding protein 6 (.1)		Potri.001G191500 [exp]	38.96	0.5626
					Potri.008G113301 [exp]	48.76	0.5493
AT5G39280		ATEXP23, ATHEXP...	EXPANSIN 23, expansin A23 (.1)		Potri.017G092700 [exp]	54.09	0.5318	ATEXPA21.1,PtEXPA27
					Potri.006G106300 [exp]	59.03	0.5721
AT2G43900			Endonuclease/exonuclease/phosp...		Potri.007G145100 [exp]	77.03	0.5702
					Potri.008G124350 [exp]	95.62	0.5796
AT5G08750			RING/FYVE/PHD zinc finger supe...		Potri.007G098900 [exp]	150.43	0.5251

Compare expression of checked genes

Potri.006G079800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.