Plant FIBer expression Database

Potri.006G080001 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G149900
[exp]
93 / 4e-24 AT5G43270 187 / 1e-54 squamosa promoter binding protein-like 2 (.1.2.3)
Potri.003G172600
[exp]
39 / 6e-05 AT5G43270 237 / 3e-73 squamosa promoter binding protein-like 2 (.1.2.3)
Potri.001G055900
[exp]
36 / 0.0005 AT5G43270 233 / 3e-72 squamosa promoter binding protein-like 2 (.1.2.3)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.006G080001.1 pacid=42769231 polypeptide=Potri.006G080001.1.p locus=Potri.006G080001 ID=Potri.006G080001.1.v4.1 annot-version=v4.1
ATGCACCCCCTCCTGTCAAGCTGCATCAGTTCTCAGGCTCTCAGTTTGACCAATGGTAGACAGCAGATGAATGCTGTATTGAATAGGGTGCCTTTCCTGG
AAGCAAACTCAACCTGGCAAAGCAATTGCAGCTTTAAGGTTACTCACTCTGGAGATTTTTTTATTAGGCCTGCAAAAGCAGGGGGGATCCGTTGGCAGCT
TAATTAG
AA sequence
>Potri.006G080001.1 pacid=42769231 polypeptide=Potri.006G080001.1.p locus=Potri.006G080001 ID=Potri.006G080001.1.v4.1 annot-version=v4.1
MHPLLSSCISSQALSLTNGRQQMNAVLNRVPFLEANSTWQSNCSFKVTHSGDFFIRPAKAGGIRWQLN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.006G080001
[exp]
0 1
AT4G36240 GATA GATA7 GATA transcription factor 7 (.... Potri.005G066100
[exp]
14.89 0.7848
AT2G15530 RING/U-box superfamily protein... Potri.011G103301
[exp]
15.55 0.8155
Potri.006G001701
[exp]
19.05 0.7397
AT1G43760 DNAse I-like superfamily prote... Potri.002G000402
[exp]
23.23 0.7996
AT1G31430 Pentatricopeptide repeat (PPR-... Potri.003G088600
[exp]
25.09 0.7962
AT1G17180 ATGSTU25 glutathione S-transferase TAU ... Potri.001G394800
[exp]
26.94 0.6910
AT3G56550 Pentatricopeptide repeat (PPR)... Potri.016G029500
[exp]
38.53 0.7754
AT5G11580 Regulator of chromosome conden... Potri.018G044400
[exp]
44.63 0.7795
AT4G14850 MEF11, LOI1 lovastatin insensitive 1, Pent... Potri.008G153700
[exp]
45.56 0.7661
AT1G29510 SAUR68 SMALL AUXIN UPREGULATED 68, SA... Potri.002G064300
[exp]
46.31 0.7311 SAUR61

Potri.006G080001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.