Plant FIBer expression Database

Potri.006G080100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G31040 497 / 5e-175 CemA-like proton extrusion protein-related (.1)
ATCG00530 69 / 5e-13 ATCG00530.1, YCF10 CemA-like proton extrusion protein-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G150000
[exp]
698 / 0 AT4G31040 511 / 2e-180 CemA-like proton extrusion protein-related (.1)
Potri.013G162300
[exp]
67 / 1e-12 ATCG00530 338 / 4e-119 CemA-like proton extrusion protein-related (.1)
Potri.016G094100
[exp]
67 / 2e-12 ATCG00530 333 / 5e-117 CemA-like proton extrusion protein-related (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021616
[exp]
472 / 4e-165 AT4G31040 494 / 3e-174 CemA-like proton extrusion protein-related (.1)
Lus10040575
[exp]
475 / 5e-165 AT4G31040 494 / 1e-172 CemA-like proton extrusion protein-related (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03040 CemA CemA family
Representative CDS sequence
>Potri.006G080100.1 pacid=42768650 polypeptide=Potri.006G080100.1.p locus=Potri.006G080100 ID=Potri.006G080100.1.v4.1 annot-version=v4.1
ATGACCACTTCAATTGTGTTATGCAACAACCTAAGCTTTAACACTAACCATAACCAAACCCCACTTAGGAACAGGAACTTATTTGCCAAATCATCCAGTT
TCTCACTCCAATTGAGTAACAGGAGGAGATTTTGTGGGGTTTTTCCAAAAGCAAAGAAGAATGGGAAAAATCATTCTAAAAGAAAGAGAAATTGGTGGCG
GAGGTTCTTTTTTGATGAAGATGGAAACTGGTTTGGATTAAAGGATGATGATTTGCTTGATGCTGAGGCGGATTTTTCTGAGAATTCAAGTGATGAGGAG
CTGTCCGAGGAAGAGAAGTTTGAGGCTTGGAAGAGGAGAGCTGAGGCAATTGTGGAGCTGAGAGAAGCACAAGAAGATATGTTGAATGAGGATAGCAGGA
GGTGGGAGGATTGGATTGTGGATTACGGTGATAATGGTCATGATGATGCTAGTAATGGTTCTTGGTGGAGTCAAGAGTTTGATGGAAATGGTGGAATTGG
AAATGGGGGCTCAGTGGAGGATGCGCGGTCGGATCCTACTGACCTTGTACCTGAGAAAGGATTTGTTGAGTCTGTTAGAGATTTGGTTCTTGGCAGGGAA
GAGGAGGATTTGCTTTATGAAGACCGTGTGTTCCGGTATGCCTCATTGAATTCGGCTAAGTTTTTGGCAGTATTGATAATCATACCCTGGGCCTTGGACT
TTGCAGTTCATGATTATGTTCTCATGCCCTTCTTAGACAGATATGTCAAGACTGTACCACTAGCAGCGCAGATGCTTGATGTGAGAAAAAGTCAAAAACT
TGAGATGATTAAGGAACTAAAAGTCGAGAAAGCAAGATTGCTGCTTGAGGTAGAGATTGGTAAATCTCCACCTCTTTCTGATGAGGAGGAATGGTGGGAA
CTACGGCATAAAGCGTTAGAGCTACGGGATGATTGGAGGTTAGAAAACCGTAGATCATTTGCCAACATATGGTCAGACATGGTATTTGGGATCTCAATCT
TCATTCTTTTGTACTTCAATCAGAGTAAAGTAGCTTTGCTGAAATTTACAGGTTATAAAATACTAAACAATGTTACAGATATTGGGAAGGCATTTCTAAT
CATACTTATCACAGATATTTTTTTGGGGTATCACTCCGAATCTGGTTGGCAGACCTTGCTGGATGTAATTGTTGAGCACTATGGACTTGAAGTTGACCAA
TCTGCTATCACCATTTTCATCTGCCTCGTTCCTGTTGTCATTGATGCATGTGTAAAGCTTTGGTTGTTCAAGTACCTACCAAGATTATCCCCGAGGGTGG
CAAACATATTCCGTGAAATGAAGCGCCACTAG
AA sequence
>Potri.006G080100.1 pacid=42768650 polypeptide=Potri.006G080100.1.p locus=Potri.006G080100 ID=Potri.006G080100.1.v4.1 annot-version=v4.1
MTTSIVLCNNLSFNTNHNQTPLRNRNLFAKSSSFSLQLSNRRRFCGVFPKAKKNGKNHSKRKRNWWRRFFFDEDGNWFGLKDDDLLDAEADFSENSSDEE
LSEEEKFEAWKRRAEAIVELREAQEDMLNEDSRRWEDWIVDYGDNGHDDASNGSWWSQEFDGNGGIGNGGSVEDARSDPTDLVPEKGFVESVRDLVLGRE
EEDLLYEDRVFRYASLNSAKFLAVLIIIPWALDFAVHDYVLMPFLDRYVKTVPLAAQMLDVRKSQKLEMIKELKVEKARLLLEVEIGKSPPLSDEEEWWE
LRHKALELRDDWRLENRRSFANIWSDMVFGISIFILLYFNQSKVALLKFTGYKILNNVTDIGKAFLIILITDIFLGYHSESGWQTLLDVIVEHYGLEVDQ
SAITIFICLVPVVIDACVKLWLFKYLPRLSPRVANIFREMKRH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G31040 CemA-like proton extrusion pro... Potri.006G080100
[exp]
0 1
Potri.018G138206
[exp]
1.41 0.9474
AT4G10180 FUS2, DET1, ATD... FUSCA 2, DE-ETIOLATED 1, light... Potri.013G161700
[exp]
2.00 0.9089 Pt-DET1.1
AT4G34020 AtDJ1C DJ-1 homolog C, Class I glutam... Potri.009G100900
[exp]
3.16 0.9223
Potri.018G145600
[exp]
3.46 0.9192
AT4G38180 FAR1_related FRS5 FAR1-related sequence 5 (.1) Potri.016G058700
[exp]
6.63 0.8670
AT1G76890 Trihelix AT-GT2, GT2 Duplicated homeodomain-like su... Potri.005G192000
[exp]
9.00 0.8894
AT2G47940 EMB3117, DEGP2 EMBRYO DEFECTIVE 3117, DEGP pr... Potri.014G135200
[exp]
9.38 0.8863 Pt-DEGP2.2
AT1G06950 ATTIC110, TIC11... ARABIDOPSIS THALIANA TRANSLOCO... Potri.013G154300
[exp]
10.00 0.8886
AT1G03670 ankyrin repeat family protein ... Potri.018G078450
[exp]
13.56 0.8946
AT4G14880 OLD3, CYTACS1, ... ONSET OF LEAF DEATH 3, O-acety... Potri.013G035200
[exp]
15.90 0.8664

Potri.006G080100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.