Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26250 575 / 0 KCS10, FDH FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1) AT3G52160 540 / 0 KCS15 3-ketoacyl-CoA synthase 15 (.1) AT2G16280 471 / 9e-163 KCS9 3-ketoacyl-CoA synthase 9 (.1) AT2G26640 470 / 2e-162 KCS11 3-ketoacyl-CoA synthase 11 (.1) AT1G19440 469 / 9e-162 KCS4 3-ketoacyl-CoA synthase 4 (.1) AT1G01120 456 / 1e-156 KCS1 3-ketoacyl-CoA synthase 1 (.1) AT1G68530 454 / 2e-156 KCS6, CER6, POP1, G2, CUT1 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) AT1G04220 448 / 2e-153 KCS2 3-ketoacyl-CoA synthase 2 (.1) AT1G25450 431 / 3e-147 KCS5, CER60 ECERIFERUM 60, 3-ketoacyl-CoA synthase 5 (.1) AT4G34510 428 / 3e-146 KCS17, KCS2 3-ketoacyl-CoA synthase 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G218000 [exp] 602 / 0 AT2G26250 896 / 0.0 FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1) Potri.018G032200 [exp] 474 / 5e-164 AT2G26640 867 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.004G155600 [exp] 472 / 5e-163 AT1G19440 899 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Potri.009G116700 [exp] 471 / 8e-163 AT1G19440 899 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Potri.006G249200 [exp] 471 / 2e-162 AT2G26640 886 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G080200 [exp] 465 / 2e-160 AT2G26640 759 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079500 [exp] 464 / 9e-160 AT2G26640 758 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G080400 [exp] 462 / 3e-159 AT2G26640 759 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.002G178000 [exp] 462 / 5e-159 AT1G01120 826 / 0.0 3-ketoacyl-CoA synthase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028105 [exp] 749 / 0 AT2G26250 607 / 0.0 FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1) Lus10040796 [exp] 604 / 0 AT2G26250 861 / 0.0 FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1) Lus10016528 [exp] 603 / 0 AT2G26250 866 / 0.0 FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1) Lus10009799 [exp] 544 / 0 AT2G26250 797 / 0.0 FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1) Lus10042318 [exp] 471 / 2e-162 AT1G19440 890 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10026345 [exp] 469 / 5e-162 AT1G19440 889 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10030209 [exp] 467 / 8e-161 AT1G01120 845 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Lus10012611 [exp] 466 / 2e-160 AT1G01120 863 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Lus10002691 [exp] 463 / 2e-159 AT1G01120 845 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Lus10001657 [exp] 461 / 1e-158 AT1G19440 892 / 0.0 3-ketoacyl-CoA synthase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [poplar] [flax] Thiolase PF08392 [poplar] [flax] FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like protein CL0046 [poplar] [flax] Thiolase PF08541 [poplar] [flax] ACP_syn_III_C 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Representative CDS sequence Show only first row Show all	>Potri.006G080400.1 pacid=42767586 polypeptide=Potri.006G080400.1.p locus=Potri.006G080400 ID=Potri.006G080400.1.v4.1 annot-version=v4.1 ATGGCAGGAGAGCAGGAGTTATTGTCCACTGAAATTGTGAACCGGGGCATAGAGAATTCAGGCCCATATGCTGGATCTTTGAATTTCTCTGTCAGGGTTC GACGAGGATTGCCGGATTTCCTCAACTCGGTTAACTTGAAATATGTCAAGCTGGGATATTCCTATCTCCTTAGCCCTGTCTTTTATTTCCTAACAGCACC AGTTCTCATGGTGATCTTCAGTGCTCAGATTGGAAAGCTCTTCATCTGGCAAGATTTCTGTCCAAAATGTGACCCCATTGATGCACTTTTCATTGTGGGA TTGTTGAGTTTAATTATATACATTTATCTTTATTTAAGCCCTCGGTCTACTTATTTAGTCGACTTCGCTTGTTATCGTCCACCAAATGAACTCAAGATTT CGAAGGACGAATTCATCGAGTTGGCGAAGAAATCAGGCAAATTTAATGGTGCCGCCATAGAGTTTCAGCGCCGAGCTCTCAAGAATTCTGGCATTGGAGA TGAGACCTACATGCCTAGAATAGTTTTTCAACCTGGGCACAAGATAACACTAAAGGATGGCCGTGAAGAGGCAGCAATGGTCATGTTTGGAGCAGTAGAT GACCTTCTTGCCGCCACAAAAATAAGGCCCAAGGACATAAAAATTCTTATTGTCAACTGTGGGATCCTAAATACTACCCCGTCACTCTCATCAATGGTAA TAAATCACTACAAGCTTAGGCATGATATTCAAAACTTCAATCTCGGTGGCATGGGATGTGCTGCTGGCATTATAGCTATTGATCTAGCTAAAGACCTTCT GAATGCATATCCTGGATGCTATGCACTGGTGGTGAGCACAGAAGCGGTGAGCTATACATGGTACAGTGGCAATGATATGGATATGCTCCTTCCTAATTGT TTCTTCAGACTTGGCGCAGCAGCCATGCTTCTATCCAGTTGCCGCCTTGACCGATGGCGATCTAAGTATGAACTGAAGACGCTAGTTCGAACTCACAAAG GCATGGACAACAGAAGCTTCAAAAGCATACATCTAAGGGAAGATGCAGAACGAAAGCAAGGTCTGTCAGTTAGCAAGGATCTGGTTGAGGTGGGAGGCCA TGCACTCAAGGCCAACATCACCACTCTAGGCCCTTTAGTCCTTCCCGTGTCTGAACAAGTTCATTTTTTCACTAATTTGCTCTTCAAGAAGAAAAACAGA CCATACATTCCAAACTACAAGCTTGCTTTTGAGCATGTGTGCATCCTAGCAACTAGCAAAAAGGTGCTAGATGAAATACAGAAGAACTTGGAGCTTACAG AGGAATACATGGAGGCATCAAAGAAAACTTTGGAGCAATTTGGGAACACTTCGAGTAGCAGTGTCTGGTATGAACTCGCTTACTTGGAGACAAATACAAG GATCAAACGAGGTGATAGGATCTGGCAACTTGCTTTTGGTTCGGGGTTCAAGTGCAACAGTGTTGTTTGGAAGGCGCTTGGGAATGTTGGGAAGCCCAAG CGGAGTCCTTGGATTCAGGATTCTAACTGA
AA sequence Show only first row Show all	>Potri.006G080400.1 pacid=42767586 polypeptide=Potri.006G080400.1.p locus=Potri.006G080400 ID=Potri.006G080400.1.v4.1 annot-version=v4.1 MAGEQELLSTEIVNRGIENSGPYAGSLNFSVRVRRGLPDFLNSVNLKYVKLGYSYLLSPVFYFLTAPVLMVIFSAQIGKLFIWQDFCPKCDPIDALFIVG LLSLIIYIYLYLSPRSTYLVDFACYRPPNELKISKDEFIELAKKSGKFNGAAIEFQRRALKNSGIGDETYMPRIVFQPGHKITLKDGREEAAMVMFGAVD DLLAATKIRPKDIKILIVNCGILNTTPSLSSMVINHYKLRHDIQNFNLGGMGCAAGIIAIDLAKDLLNAYPGCYALVVSTEAVSYTWYSGNDMDMLLPNC FFRLGAAAMLLSSCRLDRWRSKYELKTLVRTHKGMDNRSFKSIHLREDAERKQGLSVSKDLVEVGGHALKANITTLGPLVLPVSEQVHFFTNLLFKKKNR PYIPNYKLAFEHVCILATSKKVLDEIQKNLELTEEYMEASKKTLEQFGNTSSSSVWYELAYLETNTRIKRGDRIWQLAFGSGFKCNSVVWKALGNVGKPK RSPWIQDSN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26250		KCS10, FDH	FIDDLEHEAD, 3-ketoacyl-CoA syn...		Potri.006G080400 [exp]	0	1
					Potri.002G235550 [exp]	3.74	0.6678
AT1G57775			Protein of unknown function (D...		Potri.004G115251 [exp]	4.24	0.7244
AT1G43760			DNAse I-like superfamily prote...		Potri.017G066550 [exp]	4.24	0.6051
AT1G57775			Protein of unknown function (D...		Potri.004G115351 [exp]	5.19	0.7244
					Potri.010G033266 [exp]	6.00	0.7244
AT4G08630			unknown protein		Potri.005G044600 [exp]	14.96	0.5740
AT1G43760			DNAse I-like superfamily prote...		Potri.004G128961 [exp]	16.70	0.5674
					Potri.001G134200 [exp]	24.18	0.5320
					Potri.002G209988 [exp]	29.29	0.5111
					Potri.012G022650 [exp]	35.49	0.6358

Compare expression of checked genes

Potri.006G080400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.