Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45490 469 / 4e-169 ATAUR3 ataurora3 (.1) AT2G25880 387 / 9e-137 ATAUR2 ataurora2 (.1.2) AT4G32830 387 / 2e-136 ATAUR1 ataurora1 (.1) AT5G25110 208 / 6e-64 CIPK25, SnRK3.25 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) AT5G10930 206 / 2e-63 CIPK5, SnRK3.24 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) AT1G30270 204 / 2e-62 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT5G21326 199 / 9e-61 Ca2+regulated serine-threonine protein kinase family protein (.1) AT2G26980 196 / 2e-60 CIPK3, SnRK3.17 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) AT2G25090 194 / 1e-58 CIPK16, SnRK3.18 SNF1-RELATED PROTEIN KINASE 3.18, CBL-interacting protein kinase 16 (.1) AT5G45820 191 / 6e-58 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G235000 [exp] 387 / 1e-136 AT4G32830 553 / 0.0 ataurora1 (.1) Potri.018G057700 [exp] 382 / 2e-134 AT4G32830 544 / 0.0 ataurora1 (.1) Potri.006G062800 [exp] 207 / 1e-63 AT1G30270 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.002G177900 [exp] 203 / 2e-62 AT1G01140 711 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.014G104200 [exp] 203 / 2e-62 AT1G01140 688 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.018G119200 [exp] 202 / 7e-62 AT1G30270 749 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.006G263500 [exp] 199 / 5e-61 AT5G25110 568 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Potri.013G156000 [exp] 197 / 3e-60 AT5G58380 623 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.019G048800 [exp] 196 / 6e-60 AT5G58380 539 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020580 [exp] 477 / 3e-172 AT2G45490 482 / 3e-174 ataurora3 (.1) Lus10006266 [exp] 417 / 1e-148 AT2G45490 427 / 1e-152 ataurora3 (.1) Lus10005487 [exp] 392 / 4e-138 AT4G32830 545 / 0.0 ataurora1 (.1) Lus10006033 [exp] 345 / 3e-119 AT4G32830 488 / 2e-175 ataurora1 (.1) Lus10042229 [exp] 204 / 8e-63 AT5G58380 676 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10028115 [exp] 199 / 8e-61 AT1G30270 793 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10042816 [exp] 199 / 2e-60 AT1G30270 794 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10036280 [exp] 195 / 3e-59 AT4G30960 662 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10021852 [exp] 194 / 4e-59 AT4G30960 658 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10024448 [exp] 192 / 6e-58 AT5G25110 654 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF14531 [poplar] [flax] Kinase-like Kinase-like
Representative CDS sequence Show only first row Show all	>Potri.006G080500.1 pacid=42770137 polypeptide=Potri.006G080500.1.p locus=Potri.006G080500 ID=Potri.006G080500.1.v4.1 annot-version=v4.1 ATGGCAGAAGACAACAAAAAGTCAGAGCCGCGGCGAAGGGGATGGTCGATAGCCGACTTCGAGATCGGAAAACCCTTAGGGAGAGGGAAGTTCGGCCGGG TCTATGTAGCCAGGGAAGTGAAGAGCAAGTACATAGTGGCATTGAAGGTGATTTTCAAGGAACAAATCGACAAGTACAACATTCATCATCAATTGAAGAG GGAAATGGATATTCAAACCAGTCTCAGTCACCCTAACATTCTCCGTCTCTACGGTTGGTTTCACGATGACCAACGCGTCTTCATGATTCTTGAATACGCT CACGGCGGTGAACTTTTTAAAGAGCTTAGAAAGTGCGGTTATCTCTCTGAGCAAAAAGCCGCCACGTATGTTGCCAGTCTGGCGAATGCATTGGCGTATT GTCATGAGAAGGATGTGATTCACAGAGATATAAAGCCTGAAAATTTGTTGCTTGATCACGAGGGTCGACTGAAAATTGCGGATTTCGGGTGGTCTGTGCA ATCGAGGAGCAAAAGACACACTATGTGTGGAACTTTGGATTACTTGGCACCGGAAATGGTGGAGAATAAGGCTCATGATTACGCTGTTGATAACTGGACT TTGGGAATTCTTTGTTATGAGTTCCTCTATGGGGCTCCTCCCTTTGAGGCTGAGAGTCAGCGTGATACGTTCAGAAGGATTGTGAAGGTTGATCTTACTT TTCCTTCCACTCCTCCTGTCTCTGCAGAAGCAAAGAACCTCATCACCCGGCTTTTGGTCAAGGACTCTTCAAAGAGGCTGTCTCTTCAGAAGATCTTGGA GCACCCATGGATAATCAAGAATGCAAATCCAATGGGCACCTGTGATAACTAG
AA sequence Show only first row Show all	>Potri.006G080500.1 pacid=42770137 polypeptide=Potri.006G080500.1.p locus=Potri.006G080500 ID=Potri.006G080500.1.v4.1 annot-version=v4.1 MAEDNKKSEPRRRGWSIADFEIGKPLGRGKFGRVYVAREVKSKYIVALKVIFKEQIDKYNIHHQLKREMDIQTSLSHPNILRLYGWFHDDQRVFMILEYA HGGELFKELRKCGYLSEQKAATYVASLANALAYCHEKDVIHRDIKPENLLLDHEGRLKIADFGWSVQSRSKRHTMCGTLDYLAPEMVENKAHDYAVDNWT LGILCYEFLYGAPPFEAESQRDTFRRIVKVDLTFPSTPPVSAEAKNLITRLLVKDSSKRLSLQKILEHPWIIKNANPMGTCDN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45490		ATAUR3	ataurora3 (.1)		Potri.006G080500 [exp]	0	1
AT1G18090			5'-3' exonuclease family prote...		Potri.015G041400 [exp]	2.00	0.9440
AT1G20060			ATP binding microtubule motor ...		Potri.013G068501 [exp]	2.44	0.9352
AT1G78430		RIP2	ROP interactive partner 2 (.1)		Potri.001G377900 [exp]	2.82	0.9148
AT3G13560			O-Glycosyl hydrolases family 1...		Potri.003G218500 [exp]	3.00	0.9144
AT5G19160		TBL11	TRICHOME BIREFRINGENCE-LIKE 11...		Potri.008G203900 [exp]	3.87	0.9112
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Potri.019G129740 [exp]	5.74	0.9226
AT3G09080			Transducin/WD40 repeat-like su...		Potri.006G096400 [exp]	6.70	0.9205
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Potri.019G129900 [exp]	7.48	0.9220	Pt-SOM1.1,CHR905
AT4G14970			unknown protein		Potri.006G023500 [exp]	8.36	0.9133
AT5G18700		RUK, EMB3013	RUNKEL, EMBRYO DEFECTIVE 3013,...		Potri.010G031800 [exp]	8.94	0.9070

Compare expression of checked genes

Potri.006G080500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.