Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58090 740 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT4G31140 627 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT5G20870 527 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT2G19440 479 / 7e-167 O-Glycosyl hydrolases family 17 protein (.1) AT1G64760 478 / 3e-166 O-Glycosyl hydrolases family 17 protein (.1.2) AT3G24330 469 / 1e-162 O-Glycosyl hydrolases family 17 protein (.1) AT3G04010 465 / 6e-161 O-Glycosyl hydrolases family 17 protein (.1) AT5G18220 459 / 7e-159 O-Glycosyl hydrolases family 17 protein (.1) AT5G64790 452 / 4e-156 O-Glycosyl hydrolases family 17 protein (.1) AT4G17180 449 / 8e-155 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G150400 [exp] 861 / 0 AT5G58090 735 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.006G280700 [exp] 647 / 0 AT4G31140 676 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G000900 [exp] 637 / 0 AT4G31140 667 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.006G216700 [exp] 584 / 0 AT5G20870 633 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.013G059700 [exp] 491 / 2e-171 AT1G64760 701 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.007G078900 [exp] 489 / 2e-170 AT5G64790 528 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G072300 [exp] 488 / 4e-170 AT3G24330 647 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.019G032900 [exp] 481 / 1e-167 AT1G64760 698 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.006G002100 [exp] 474 / 2e-164 AT4G17180 711 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028104 [exp] 757 / 0 AT5G58090 729 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10040579 [exp] 757 / 0 AT5G58090 729 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10024535 [exp] 589 / 0 AT4G31140 627 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10043075 [exp] 563 / 0 AT5G20870 631 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10001183 [exp] 563 / 0 AT5G20870 628 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10002633 [exp] 491 / 3e-171 AT1G64760 681 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10020261 [exp] 489 / 2e-170 AT1G64760 676 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10031098 [exp] 483 / 4e-168 AT1G64760 694 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10039095 [exp] 464 / 8e-161 AT4G17180 727 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10006811 [exp] 457 / 1e-157 AT5G64790 565 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00332 [poplar] [flax] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [poplar] [flax] PF07983 [poplar] [flax] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Potri.006G080600.1 pacid=42767553 polypeptide=Potri.006G080600.1.p locus=Potri.006G080600 ID=Potri.006G080600.1.v4.1 annot-version=v4.1 ATGCGGTTGTATCATGTGGCTATTGGATTAGTGTCATTGCTTTCAACGGTGAGTGGTGCAATGACCATAGGTGCCAACTGGGGAACGCAAGCTACCCACC CTTTGGATCCATCCATTGTGGTGAGGCTGCTTAGGGAAAATGGGATCCAAAAGGTTAAGCTTTTTGATGCAGATTATGATACTCTAAAAGCTCTTGGTAA GAGTGGGATTGAGGTCATGGTGGGTATCCCAAATGACATGCTTGCTACTCTGGCTAGTAGCATGAAGGCTGCTGAGAAATGGGTTTCCAAAAATGTCTCC GCACATGTCACCTCAAATAATGTCAACATCAGATATGTTGCAGTTGGAAATGAACCTTTCTTGCAAACGTACAATGGAAGCTTTCTCAGAACAACATTCC CTGCTCTCCAGAATGTCCAATCTGCTCTGATAAAAGCTGGGCTTGGCAATTCAGTAAAGGTCACTGTCCCTCTGAATGCTGATGTCTATGAGAGCTCAAG TGGACTTCCTTCTGATGGTGACTTTCGAGCTGATATCCATGATCTCATGCTTGCCATTGTCAAATTCTTGAATGATGCCACTGCCCCCTTCACTGTGAAT ATCTATCCTTTCATAAGCCTGTACTCTGATGCTGACTTCCCGGTTGATTATGCCTTCTTCGATGGCAATGCAAATCCTGTAAATGATGGCGGCACATCCT ACTATAACATGTTTGATGCTAACTATGATACTCTTGTGCATGCTCTACAAAAGAATGGATTTGGGAATTTGCCTATCATTGTTGGAGAGATCGGGTGGCC AACTGATGGGGACAGGAATGCTAACATAGAATATGCCCAGCGTTTCAACCAAGGTTTCATGTCACATATTTCCAGTGGGAAAGGGACTCCATTAAAGCCT AATGCTGATATTAATGCCTATTTGTTTAGTCTGATTGATGAGGATGCCAAAAGTGTTGATCCTGGGAACTTCGAACGGCACTGGGGGGTATTTACATTTG ATGGAATGCCCAAATATGCTTTCAACCTTGGCACAACAAATACAGGAGCTTTAATTCCAGCAAGAAGAGTCAACTACCTGGAGCGTAAATGGTGTGTGAT GAAGCCATCGGCCAAGCTTGATGACCCACAAGTGCCACTAAGTGTAAGCTATGCCTGCGGACTAGCTGACTGCACTAGGCTTGGTTATGGGACATCATGT GCAAGTTTGGATTCTAGGGGGAACATTTCATATGCATTTAACAGTTATTTCCAGATACAAAATCAACTTGACGATGCATGCAAGTTTCCAAACCTTTCAA CAATCACCAAGACAGATCCATCTACTGGAACTTGCAAATTTGAGGTAATGATTGAGCCATACTATGGAGGTGCGGTACAGGCACCCGGGCATGCCAAGAA GGCACTGGGTTTGGTTGTAGGTCTCATTCTATTTTTCCTAAAGATTGTGTAA
AA sequence Show only first row Show all	>Potri.006G080600.1 pacid=42767553 polypeptide=Potri.006G080600.1.p locus=Potri.006G080600 ID=Potri.006G080600.1.v4.1 annot-version=v4.1 MRLYHVAIGLVSLLSTVSGAMTIGANWGTQATHPLDPSIVVRLLRENGIQKVKLFDADYDTLKALGKSGIEVMVGIPNDMLATLASSMKAAEKWVSKNVS AHVTSNNVNIRYVAVGNEPFLQTYNGSFLRTTFPALQNVQSALIKAGLGNSVKVTVPLNADVYESSSGLPSDGDFRADIHDLMLAIVKFLNDATAPFTVN IYPFISLYSDADFPVDYAFFDGNANPVNDGGTSYYNMFDANYDTLVHALQKNGFGNLPIIVGEIGWPTDGDRNANIEYAQRFNQGFMSHISSGKGTPLKP NADINAYLFSLIDEDAKSVDPGNFERHWGVFTFDGMPKYAFNLGTTNTGALIPARRVNYLERKWCVMKPSAKLDDPQVPLSVSYACGLADCTRLGYGTSC ASLDSRGNISYAFNSYFQIQNQLDDACKFPNLSTITKTDPSTGTCKFEVMIEPYYGGAVQAPGHAKKALGLVVGLILFFLKIV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58090			O-Glycosyl hydrolases family 1...		Potri.006G080600 [exp]	0	1
AT1G04990	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.002G223700 [exp]	19.44	0.6254	ZFN2.2
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Potri.002G097500 [exp]	33.10	0.6804	Pt-GRF10.2
AT1G55090			carbon-nitrogen hydrolase fami...		Potri.001G087400 [exp]	47.85	0.6680
AT1G31500			DNAse I-like superfamily prote...		Potri.003G106000 [exp]	56.83	0.6542
AT1G01290		CNX3	cofactor of nitrate reductase ...		Potri.014G099500 [exp]	78.21	0.6281
					Potri.016G065850 [exp]	90.00	0.6372
AT1G60900			U2 snRNP auxilliary factor, la...		Potri.011G050400 [exp]	92.43	0.5664
AT5G54880			DTW domain-containing protein ...		Potri.001G423900 [exp]	105.52	0.6077
					Potri.005G081700 [exp]	106.30	0.5988
AT3G19770		ATVPS9A	ARABIDOPSIS THALIANA VACUOLAR ...		Potri.019G066200 [exp]	114.62	0.5748

Compare expression of checked genes

Potri.006G080600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.