Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58100 1315 / 0 unknown protein AT3G28720 76 / 1e-13 unknown protein AT4G16180 47 / 8e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G150600 [exp] 1667 / 0 AT5G58100 1362 / 0.0 unknown protein Potri.017G078700 [exp] 78 / 2e-14 AT3G28720 823 / 0.0 unknown protein Potri.004G123900 [exp] 73 / 5e-13 AT3G28720 852 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027581 [exp] 1422 / 0 AT5G58100 1451 / 0.0 unknown protein Lus10008552 [exp] 822 / 0 AT5G58100 886 / 0.0 unknown protein Lus10008551 [exp] 169 / 2e-48 AT5G58100 154 / 8e-44 unknown protein Lus10033019 [exp] 77 / 7e-15 AT3G28720 450 / 2e-155 unknown protein Lus10015362 [exp] 77 / 3e-14 AT3G28720 628 / 0.0 unknown protein Lus10033020 [exp] 47 / 0.0001 AT3G28720 599 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G080700.1 pacid=42767628 polypeptide=Potri.006G080700.1.p locus=Potri.006G080700 ID=Potri.006G080700.1.v4.1 annot-version=v4.1 ATGGCCGGCGATCTTTCAACCGATTCTCTTAGATTTATTATCGTCATCTCCGCCTTTTTGACACTGCTGCTAGCTACGGGTTCATATGGGTCTCCTTCTG GAAGTCGCAAAACGGGCAAGTCTTCATTATCATCGGTGTTTTCTTTATTTAATCTCAAAGAGAAGAGTAGGTTTTGGAGTGAATCTGTTATTCACAGTGG CGATTTCGATGATTTGGAATCTTCTAGCCCTGCCAAAATGGGACCTATCAATTTCACCGAAGCCGGTAACATTGCAAGTTATCTTAAGCTCCAAGAAGTG GATTCCATGTACCTTCCAGTTCCTGTAAATTTCATTTTCATAGGCTTCGAAGGAAAAGGGAACCAAGCATTCAAGCTTCATTCAGAAGAAATTGAGCGTT GGTTCACAAAAATTGATCACATCTTTGAACATACACGCGTACCAAAAATTGGAGAAGTTCTCACCCCATTTTACAAAATTTATGTAGACAAAGAGCAACA TCACCATCTTCCCTTAGTCAGTCACATAAATTACAATTTTTCTGTTCATGCCATTCAAATGGGTGAAAAGGTTACTTATATCTTTGAGCATGCCATCAAT CTTTTGGCTCGCAAGGATGATGTGTCTGATAACAGTGATAACAAGGATGTCCTGTGGCAAGTAGATATGGACGTGATGGATGCTCTTTTCAGTAGTCTTG TTGATTATCTTCAACTTGACAATGCATATAACGTTTTCATTTTGAATCCCAAGCATGACCTAAAGAGGGCTAAATATGGCTACAGGAGAGGTTTGTCGGA TTCAGAAATAACATTTCTAAAAGAGAATAAGAGCTTGCAAACAAAAATTCTTCAGTCTGGAGGCGTTTCAGAAAGTGTTCTCGCACTTGATAAGATTAAG AGACCTCTGTATGAAAAGCATCCTATGACCGCATTTACCTGGACGATAACTGAAGAAACTGATACAGTGGAATGGTATAATATCTGCCTGGATGCATTGA ACAATGCTGAGAAGTTATATCAAGGGAAGGACACTTCTGACATCATTCAGAATAAAGTCTTACAATTATTGAAAGGGAAGAATGAGGATATGAAGCTTCT TCTTGAAAAAGAGTTAAAATCTGGGGGCTTCAGTGATTTTCCTGCAGAGTGTCTTACAGATACATGGATCGGAAGGGACAGGTGGGCCTTTATTGATTTA ACTGCTGGCCCCTTCTCGTGGGGTCCTGCTGTTGGTGGAGAAGGTGTGCGCACAGAGCGTAGTTTGCCAAATGTGCAGAAAACTATTGGTGCAGTTGCTG AGATTTCAGAAGATGAAGCTGAAGAGCGCTTGCAAGAAGCAATTCAGGAAAAGTTTTCAGTACTTGGTGATAAGGATCATCAAGCCATCGATATTCTTTT GGCTGAGATTGATATTTATGAGCTTTTTGCTTTCAAGCACTGCAAAGGAAGGAGAGTTAAGCTAGCTCTTTGTGAAGAGCTTGATGAGAGAATGCGGGAT TTGAAAAATGAGCTCCAGTCTCTTGACCATGAAAAGCACGATGAAAGTCATAAGAAGAAGGCCGTAGAGGCATTAAAACGAATGGAGAGTTGGAATCTTT TCAGTGATACCCATGAGCAGGAGTTTCGAAACTACACAGTTGCAAGGGATACCTTTCTTGCACATTTAGGTGCAACCCTTTGGGGGTCTATGAGACACGT AATCTCACCTTCACTATCTGATGGAGCATTCCACTATTACGAGAAGATATCCTTTCAGTTTTTTTTCGTCACACATGAAAAAGTTAGGAATGTTAAACAT CTACCTGTTGATCTTGAGGCTCTAAAGAATGGGCTATCCTCCTTACTTGTATCATCACAAAAGGCTATGTTCAGTGAGAACCTAGTAGTGCTGTCAGAGG ATCCTGCATTAGCAATGGCCTTTTCAGTGGCTCGGCGAGCAGCAGCTGTCCCATTATTGCTTGTTAATGGAACATATAGGAAAACCACTCGGTCCTATCT TGATTCCTCCATTCTCCAGCATCAGTTGCAGAGGCATCTCCATGACCATGGTTCTCTCAAAGGAGCACATGCCCATAGTAGGTCCACACTTGAAGTTCCT ATCTTTTGGTTCATTTATGGCGAGCCACTATTAGTTGACAAGCATTATCAGGCAAAGGCTCTTTCTGACATGGTTATTGTGGTCCAGTCAGAACCATCAT CTTGGGAAAGCCATCTGCAGTGTAATGGGCAATCAGTTTTGTGGGATTTGAGGAGCCCTGTAAAAGCTGCGTTGGCTTCTGTCTCCGAACATCTGGCTGG TTTACTTCCACTTCATCTTGTCTACAGCCATGCCCATGAAACTGCAATTGAGGATTGGGTATGGTCGGTGGGATGCAATCCTTTTTCAATCACTTCCAGA GGCTGGCATATGTCACAATTTCAGTCTGATACAATTGCTCGGAGCTACATCATCACAGCGCTTGAAGAGTCAATACAACTGGTCAATGCAGCCATTCGTC GTCTACTCATGGAACATACATCTGAAAAGACCTTCAAAATGTTTCAGTCTGAGGAGCGAGAACTTGTGAACAAGTATAATTATGTTGTTAGCCTTTGGAG AAGGATTTCAACTATTCATGGAGAGCTGCGTTACATGGATGCAATGAGACTTCTTTATACTTTAGAGGATGCATCTGAAAGGTTTGCTAATCAAGTGAAT GCGACTATGGCCGTTCTTCACCCAATTCACTGCATGAGAGAGAGAAAAGTACATGTGGTGATTGATATGACAACAGTCCCTGCTTTCTTGGTTGTTCTTG GTGTTCTGTATATGGTTCTGAAGCCTAGACGACCAAAACCCAAGATTAATTAA
AA sequence Show only first row Show all	>Potri.006G080700.1 pacid=42767628 polypeptide=Potri.006G080700.1.p locus=Potri.006G080700 ID=Potri.006G080700.1.v4.1 annot-version=v4.1 MAGDLSTDSLRFIIVISAFLTLLLATGSYGSPSGSRKTGKSSLSSVFSLFNLKEKSRFWSESVIHSGDFDDLESSSPAKMGPINFTEAGNIASYLKLQEV DSMYLPVPVNFIFIGFEGKGNQAFKLHSEEIERWFTKIDHIFEHTRVPKIGEVLTPFYKIYVDKEQHHHLPLVSHINYNFSVHAIQMGEKVTYIFEHAIN LLARKDDVSDNSDNKDVLWQVDMDVMDALFSSLVDYLQLDNAYNVFILNPKHDLKRAKYGYRRGLSDSEITFLKENKSLQTKILQSGGVSESVLALDKIK RPLYEKHPMTAFTWTITEETDTVEWYNICLDALNNAEKLYQGKDTSDIIQNKVLQLLKGKNEDMKLLLEKELKSGGFSDFPAECLTDTWIGRDRWAFIDL TAGPFSWGPAVGGEGVRTERSLPNVQKTIGAVAEISEDEAEERLQEAIQEKFSVLGDKDHQAIDILLAEIDIYELFAFKHCKGRRVKLALCEELDERMRD LKNELQSLDHEKHDESHKKKAVEALKRMESWNLFSDTHEQEFRNYTVARDTFLAHLGATLWGSMRHVISPSLSDGAFHYYEKISFQFFFVTHEKVRNVKH LPVDLEALKNGLSSLLVSSQKAMFSENLVVLSEDPALAMAFSVARRAAAVPLLLVNGTYRKTTRSYLDSSILQHQLQRHLHDHGSLKGAHAHSRSTLEVP IFWFIYGEPLLVDKHYQAKALSDMVIVVQSEPSSWESHLQCNGQSVLWDLRSPVKAALASVSEHLAGLLPLHLVYSHAHETAIEDWVWSVGCNPFSITSR GWHMSQFQSDTIARSYIITALEESIQLVNAAIRRLLMEHTSEKTFKMFQSEERELVNKYNYVVSLWRRISTIHGELRYMDAMRLLYTLEDASERFANQVN ATMAVLHPIHCMRERKVHVVIDMTTVPAFLVVLGVLYMVLKPRRPKPKIN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58100			unknown protein		Potri.006G080700 [exp]	0	1
AT1G61850			phospholipases;galactolipases ...		Potri.004G018700 [exp]	7.54	0.8622
AT3G14450		CID9	CTC-interacting domain 9 (.1)		Potri.001G377500 [exp]	9.00	0.8376
AT3G04580		EIN4	ETHYLENE INSENSITIVE 4, Signal...		Potri.013G044100 [exp]	14.17	0.7792	Pt-EIN4.3
AT4G31080			Protein of unknown function (D...		Potri.006G281200 [exp]	15.09	0.8493
AT4G31150			endonuclease V family protein ...		Potri.018G001000 [exp]	20.24	0.8335
AT1G28240			Protein of unknown function (D...		Potri.011G053000 [exp]	21.35	0.8307
AT5G07900			Mitochondrial transcription te...		Potri.001G035300 [exp]	21.63	0.7684
AT3G09090		DEX1	DEFECTIVE IN EXINE FORMATION 1...		Potri.006G096100 [exp]	25.61	0.8227	DEX1.1
AT3G23340		CKL10	casein kinase I-like 10 (.1)		Potri.008G168100 [exp]	26.51	0.7973	CKI1.3
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Potri.006G109200 [exp]	26.58	0.8236

Compare expression of checked genes

Potri.006G080700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.