Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75340 193 / 9e-57 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040567 [exp] 274 / 8e-89 AT1G75340 227 / 1e-70 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10040585 [exp] 274 / 8e-89 AT1G75340 227 / 1e-70 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10028100 [exp] 270 / 1e-86 AT1G75340 232 / 8e-72 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [poplar] [flax] CCCH_zf PF00642 [poplar] [flax] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Potri.006G081100.1 pacid=42768894 polypeptide=Potri.006G081100.1.p locus=Potri.006G081100 ID=Potri.006G081100.1.v4.1 annot-version=v4.1 ATGTATAAGAAGAAGGAACCTTGTAGGAATTTTCAGCGTGGCAGCTGTCAGTATGGTGATAGATGCAAATTTCTTCATGTCACTCCTCAGCAACCCCCCA AATCCAGCAATAATCCCTTTGGATTTGGCAATCAGCAAACACCCAATAACAACAATAATAACTCTTTTGGATTTGGCAATCGACAGCAACAGCAAAGACC CAACAGTCCTTTTGGGTCTGCCCCTAATAATTCTGCTAATAACAGACCTCAACAGTTCAAGCCTTTTGAGAATAAATGGTCCCGTGGTGCCTCTGCCCCT TCATCGCGTCAACGACCTGACAGTCAGCCTGCCAATCATAATTGCGCGGATCCTGATTCGTGTAAACGTCTCATTGCTGAAGATTTTGAGCATGAGAGAC CGCTTTGGAAGCTTACATGCTATGGTCATTTGAGAGATGGCCCTTGTGACATTATTGGTGATGTTAGTTACGAAGAATTGCGAGCTGCAGCATATGATGA TTATAAGCGTGGGTTGAGCTTGCAATCAATTGTTGAAAAGGAGAGAAATTTACTCAATTCGAAGTTGATCGAGTTCAATAACCTTCTCCATAATCCCAGT ATAGCTCCCTCAAAGCCTGCTCCTGCTGGTCAGAGTCCATTCTTCGGAGCCACTGCCAATGCAACTCCAGCTGCTGCTCAAAATACTGCCCCTCCATCAG TTTCCAGTTTTGGTCAACTGGGGACTTCTCTTAATATGAGGTCTGCTACACCATCAAATAATGCCTTTGGGCAACCAAGTCAGCCTTTGACTGCATTTGG AGTAAGCCCCTCTGCACCATCAAACAATGTCTTTGGGCAATCAAATCTTCCTTCAAATTCTAGTCAGACTGTGAGTGCATTTGGGACAAATAATTTTCTC TCTGCAAACGCCTCAAATTCTAGCCAGACTTCAAGTGCATTTGGAACAACCAGTTTTCCATCCATAAATGCCGGCCTGCTTGGCAGCCAACTTCCTAATC AGGCACTTGGAAATTCCTTCTCCCCCAATATAGCAGGCTTTGGCAACAGTGGTGTAAACAGCATTCAAAATATTTCTTCTTCTCCGTTGTCAATGCAAAA CCCATCAATCCACCCTCTTAGCATTTCCAACGGGCTCAATTCAGCTTTTAATGCAGCAGGCCAAGCTACTACAAATGTTCAGCCAGTAACTATGGTGCAA AGGGAGACTGTTTCTGGGGATGCAAGCATCTGGTTGAAGGAAAAATGGATTCCTGGAGAGATTCCAGAAGAAGCACCTCCTGAAGAGTATGTCTTCTAG
AA sequence Show only first row Show all	>Potri.006G081100.1 pacid=42768894 polypeptide=Potri.006G081100.1.p locus=Potri.006G081100 ID=Potri.006G081100.1.v4.1 annot-version=v4.1 MYKKKEPCRNFQRGSCQYGDRCKFLHVTPQQPPKSSNNPFGFGNQQTPNNNNNNSFGFGNRQQQQRPNSPFGSAPNNSANNRPQQFKPFENKWSRGASAP SSRQRPDSQPANHNCADPDSCKRLIAEDFEHERPLWKLTCYGHLRDGPCDIIGDVSYEELRAAAYDDYKRGLSLQSIVEKERNLLNSKLIEFNNLLHNPS IAPSKPAPAGQSPFFGATANATPAAAQNTAPPSVSSFGQLGTSLNMRSATPSNNAFGQPSQPLTAFGVSPSAPSNNVFGQSNLPSNSSQTVSAFGTNNFL SANASNSSQTSSAFGTTSFPSINAGLLGSQLPNQALGNSFSPNIAGFGNSGVNSIQNISSSPLSMQNPSIHPLSISNGLNSAFNAAGQATTNVQPVTMVQ RETVSGDASIWLKEKWIPGEIPEEAPPEEYVF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75340	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.006G081100 [exp]	0	1
AT5G04260		WCRKC2	WCRKC thioredoxin 2 (.1)		Potri.010G225701 [exp]	4.58	0.8409
AT5G07610			F-box family protein (.1)		Potri.008G016300 [exp]	5.19	0.8459
AT4G15850		ATRH1	RNA helicase 1 (.1)		Potri.004G158000 [exp]	7.93	0.8250	ATRH1.1
AT1G74700		NUZ, TRZ1	tRNAse Z1 (.1)		Potri.015G064400 [exp]	8.24	0.8043
AT1G04590		EMB2748	unknown protein		Potri.016G103000 [exp]	10.19	0.8326
AT1G56300			Chaperone DnaJ-domain superfam...		Potri.005G020300 [exp]	10.58	0.7609
AT4G37020			unknown protein		Potri.007G043200 [exp]	17.02	0.8317
AT3G16090		AtHrd1A	homolog of yeast Hrd1, RING/U-...		Potri.013G088400 [exp]	17.32	0.8152
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Potri.001G351532 [exp]	18.57	0.8114
AT1G79090			unknown protein		Potri.011G143900 [exp]	19.89	0.8306

Compare expression of checked genes

Potri.006G081100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.