Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62440 553 / 0 LRX2 leucine-rich repeat/extensin 2 (.1) AT1G12040 544 / 0 LRX1 leucine-rich repeat/extensin 1 (.1) AT3G24480 469 / 1e-157 Leucine-rich repeat (LRR) family protein (.1) AT4G18670 470 / 4e-153 Leucine-rich repeat (LRR) family protein (.1) AT4G13340 467 / 7e-153 LRX3 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) AT1G49490 439 / 3e-141 Leucine-rich repeat (LRR) family protein (.1) AT3G22800 421 / 4e-139 Leucine-rich repeat (LRR) family protein (.1) AT4G33970 423 / 5e-137 Leucine-rich repeat (LRR) family protein (.1) AT3G19020 431 / 6e-137 Leucine-rich repeat (LRR) family protein (.1) AT5G25550 405 / 1e-133 Leucine-rich repeat (LRR) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G151000 [exp] 699 / 0 AT1G62440 533 / 0.0 leucine-rich repeat/extensin 2 (.1) Potri.018G075900 [exp] 483 / 3e-160 AT3G24480 603 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.006G158814 [exp] 477 / 2e-159 AT3G24480 614 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.006G245600 [exp] 444 / 6e-147 AT3G24480 516 / 3e-180 Leucine-rich repeat (LRR) family protein (.1) Potri.010G083000 [exp] 418 / 9e-139 AT3G22800 477 / 7e-167 Leucine-rich repeat (LRR) family protein (.1) Potri.014G036700 [exp] 422 / 9e-138 AT2G15880 502 / 1e-170 Leucine-rich repeat (LRR) family protein (.1) Potri.004G146350 [exp] 426 / 2e-136 AT2G15880 600 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.010G083100 [exp] 407 / 2e-135 AT3G22800 447 / 2e-156 Leucine-rich repeat (LRR) family protein (.1) Potri.009G108100 [exp] 431 / 3e-135 AT3G19020 567 / 0.0 Leucine-rich repeat (LRR) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028097 [exp] 525 / 4e-178 AT1G62440 466 / 7e-157 leucine-rich repeat/extensin 2 (.1) Lus10017727 [exp] 454 / 2e-148 AT3G24480 611 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10039362 [exp] 406 / 1e-134 AT3G22800 416 / 2e-143 Leucine-rich repeat (LRR) family protein (.1) Lus10037905 [exp] 397 / 3e-130 AT4G13340 432 / 9e-149 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) Lus10021001 [exp] 396 / 4e-127 AT3G19020 490 / 1e-165 Leucine-rich repeat (LRR) family protein (.1) Lus10012047 [exp] 389 / 1e-123 AT3G19020 508 / 6e-172 Leucine-rich repeat (LRR) family protein (.1) Lus10041190 [exp] 375 / 4e-122 AT3G22800 421 / 3e-145 Leucine-rich repeat (LRR) family protein (.1) Lus10027935 [exp] 380 / 2e-120 AT1G49490 538 / 6e-180 Leucine-rich repeat (LRR) family protein (.1) Lus10033672 [exp] 368 / 2e-119 AT4G28380 488 / 6e-173 Leucine-rich repeat (LRR) family protein (.1) Lus10039363 [exp] 372 / 1e-118 AT3G22800 447 / 1e-152 Leucine-rich repeat (LRR) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.006G081200.2 pacid=42768249 polypeptide=Potri.006G081200.2.p locus=Potri.006G081200 ID=Potri.006G081200.2.v4.1 annot-version=v4.1 ATGTCATCTCCTCCTCGCTTATTCTTGATTCTTTTCTTGCTTGTTTCCACTTCCTCTTTCCTCTTCCAGATCTCCTCTGCAGCCCATGAAGATGAAGATC ATGATATAGACGTAGATCCAAACCTCAAGTTTGAGAACCCTAGGATCCGCAGAGCCTACATTGCCTTGCAGTCATGGAAACAAGCCATCTATTCAGACCC ACTCAACTTCACGGCCAACTGGAAGGGCTCAGACGTGTGCTCTTACATGGGGATCTTTTGTGCTCCATCTCCCCAGAACAAGAAAGTAAGGGTGGTGGCT GGCATTGACCTCAACCATGCTGACATTGCTGGCTACCTCCCTACCGAGCTCGGCCTTCTTACCGATCTGGCACTCTTCCACATCAACTCCAACAGATTCT GTGGAGTGGTGCCCAATAGTTTCAGCAAAATGAAGCTTCTACATGAGCTGGACCTTAGCAATAATCGGTTTGTGGGCAAATTTCCGAAGGTTGTGCTCTC ACTGCCTTCCCTCAAGTACTTGGATCTGCGCTTCAACGAGTTTGAAGGTTCTGTGCCCTCCCAGCTCTTTGACAAGCCTCTTGATGCTATCTTCTTGAAC GACAACAGGTTCCAGTTTGGCATCCCAGAGAATCTTGGGAACTCTCCTGTTTCTGTTCTTGTCTTTGCGAACAACAACCTTGGTGGGTGCATTCCAGGCA GCATCGGAAAGATGGGCAAAACCCTGAACGAGATCATTCTCATGAACGACAATCTCACTGGATGCTTGCCTCCCCAGATCGGGATGCTCAAGGAAGTAAC TGTTTTTGACGTGAGCTTCAATCATCTTCAAGGCTCTCTCCCTTCCAGCATTGGAAACATGAAGAGTGTTGAGCAACTTGACATTGCACACAATAGTTTC ACAGGTGCTATACCTGCCAGTGTTTGCCAGTTGCCTAATTTGCAAAACTTCACCTTTTCTTTCAACTATTTCACTGGCGAAGCTCCTAGCTGTGCTGCTA TCGGAGGCGTCTCCAATGGTACCCAGAATTGCATTCCTGGAAAGACAAATCAGAGATCAGCCAAGCAATGTTCTTCTGAAGCTGCACGCCCTGTTGACTG CAGCAAGTTCAAATGCGGTGGCGGTGGTGGCGGAGGTGGAAGTGGCTCTCCATTAACACCACCACCACGGTCGTGGAGAGGTTCTCCAGTTAGAAGGCCA GCACCAAATCCTGCACCCATTAGAAAGCCATTCTTTGCATCACCACCACCACCACCACCCACTTCCAAGTCTTCACCTTCCACCAGATCACACCCCCCAC CACCTCCTACAAGGTCTTTCCATCCGCCGCCATCTCCACATTTTGCATCCCCACCACCGCCTAGTAAAAAAGTATCGCCCAGAACACATCTTCCACCACC ACCGCCTCCACCCCCATCTCCACCTCCACCTGTAGAACAACAGCCACCAACTTATCACCATATACCGCCACCACCATCTCCTCCTCCTCCACCCAGCCAT TACCATTCAAATCATCCAGCACCGCCACCTATCGAAAAAGTCTCACCCGGTACTCATTACCATGTACCACCACCCCCGCCTTCCCATCAATACCAAGCAC CACCGCCACCAAAGCAGTCAGCTGAAGTTCCAGCACCAAGTTACCACCCTAACTCTCCACCACCACCCCCGCCTTCCTGTCAGTACCAAGCACCACCGCC ACCAAAGCAGTCAGCCGAAGTTCCAGCACCAAGTTACCACACTAACTCTCCGCCACCACCCCCTCCACCAACTAATGGATATACACATTCTCCTCCTCCA ACCCAGCCTACAGCTCCAGTTCCATCACCAGTAGAGTATTACCCACCTAAAGCAGCTTCTAGTCCACCTCCACCTCCATTGTATCAGACGCCACCATCAC CAAGTTACCACACTAACTCTCCACCACCACCCCCTCCACCAACGAATGGATATACACATTCTCCTCCTCCAACCCAGCCTACAGCTCCAGTTCCATCACC AGTAGAGTATTACCCACCTAAAGCAGCTTCTAGTCCACCTCCACCTCCACCTCCACCTCCATTGTATCAGACGCCACCATCACCGCCGCCGCCTTCAGAA GAACCATGGCTTCCCCTACCACCTCCACCATCAACTGGGTGTATCACTCCAGAATCGCCGCCGCCGCCATCACCTACACCAAGCTATCAGCACCCACACC CGCCGCCGCCGCCACCTACCCCAAGCTACCACCACCCGCAATCACCATCTCCACCACCACCACCACCTATGTCAAGCTATGAACACCCACAATCACCTCC ACCACCGCCACCTGTGCCAAGCTATCATCATCCGCAATCACCTCCACCTCCCCCTCATCAACAACAATGGCATTATCCACCATCAATATCCCATCAACAA AGTCCTCCGCCACCTCCCCATAATTCATATGCACCACCACCACCACCGCCGACTCCATCGCCGCCGCCGCCAGCAATTGAGAACACAGTTCCACTTCCAC CGATTGTAGGAGTATCGTATGCATCTCCTCCTCCCCCAACAATTCCCTACTACTAA
AA sequence Show only first row Show all	>Potri.006G081200.2 pacid=42768249 polypeptide=Potri.006G081200.2.p locus=Potri.006G081200 ID=Potri.006G081200.2.v4.1 annot-version=v4.1 MSSPPRLFLILFLLVSTSSFLFQISSAAHEDEDHDIDVDPNLKFENPRIRRAYIALQSWKQAIYSDPLNFTANWKGSDVCSYMGIFCAPSPQNKKVRVVA GIDLNHADIAGYLPTELGLLTDLALFHINSNRFCGVVPNSFSKMKLLHELDLSNNRFVGKFPKVVLSLPSLKYLDLRFNEFEGSVPSQLFDKPLDAIFLN DNRFQFGIPENLGNSPVSVLVFANNNLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKEVTVFDVSFNHLQGSLPSSIGNMKSVEQLDIAHNSF TGAIPASVCQLPNLQNFTFSFNYFTGEAPSCAAIGGVSNGTQNCIPGKTNQRSAKQCSSEAARPVDCSKFKCGGGGGGGGSGSPLTPPPRSWRGSPVRRP APNPAPIRKPFFASPPPPPPTSKSSPSTRSHPPPPPTRSFHPPPSPHFASPPPPSKKVSPRTHLPPPPPPPPSPPPPVEQQPPTYHHIPPPPSPPPPPSH YHSNHPAPPPIEKVSPGTHYHVPPPPPSHQYQAPPPPKQSAEVPAPSYHPNSPPPPPPSCQYQAPPPPKQSAEVPAPSYHTNSPPPPPPPTNGYTHSPPP TQPTAPVPSPVEYYPPKAASSPPPPPLYQTPPSPSYHTNSPPPPPPPTNGYTHSPPPTQPTAPVPSPVEYYPPKAASSPPPPPPPPPLYQTPPSPPPPSE EPWLPLPPPPSTGCITPESPPPPSPTPSYQHPHPPPPPPTPSYHHPQSPSPPPPPPMSSYEHPQSPPPPPPVPSYHHPQSPPPPPHQQQWHYPPSISHQQ SPPPPPHNSYAPPPPPPTPSPPPPAIENTVPLPPIVGVSYASPPPPTIPYY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G62440		LRX2	leucine-rich repeat/extensin 2...		Potri.006G081200 [exp]	0	1
AT1G62440		LRX2	leucine-rich repeat/extensin 2...		Potri.018G151000 [exp]	2.82	0.9317
AT4G22190			unknown protein		Potri.006G283300 [exp]	4.89	0.9216
AT2G20420			ATP citrate lyase (ACL) family...		Potri.002G259600 [exp]	5.47	0.9316
AT5G15350		AtENODL17	early nodulin-like protein 17 ...		Potri.004G121100 [exp]	6.92	0.9278
AT5G64310		ATAGP1, AGP1	arabinogalactan protein 1 (.1)		Potri.017G050300 [exp]	8.60	0.8825
AT4G22190			unknown protein		Potri.006G282500 [exp]	8.83	0.9027
AT1G29630			5'-3' exonuclease family prote...		Potri.011G077001 [exp]	12.96	0.9138
AT3G27080		TOM20-3	translocase of outer membrane ...		Potri.003G173400 [exp]	14.14	0.9229	Pt-TOM20.2
AT1G80350		FTR, FRC2, FRA2...	KATANIN 1, FAT ROOT, FURCA2, F...		Potri.017G013601 [exp]	15.71	0.9123
AT1G78922			unknown protein		Potri.007G001650 [exp]	18.16	0.9112

Compare expression of checked genes

Potri.006G081200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.