Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G07400 286 / 3e-89 VFB3 VIER F-box proteine 3 (.1) AT5G67250 272 / 3e-84 VFB4, SKIP2 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1) AT1G47056 261 / 3e-80 VFB1 VIER F-box proteine 1 (.1) AT3G50080 253 / 4e-77 VFB2 VIER F-box proteine 2 (.1) AT4G15475 66 / 3e-11 F-box/RNI-like superfamily protein (.1) AT2G25490 65 / 7e-11 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT5G23340 60 / 2e-09 RNI-like superfamily protein (.1) AT5G25350 58 / 1e-08 EBF2 EIN3-binding F box protein 2 (.1) AT5G51370 57 / 1e-08 RNI-like superfamily protein (.1.2) AT5G01720 57 / 4e-08 RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G123100 [exp] 298 / 3e-94 AT1G47056 649 / 0.0 VIER F-box proteine 1 (.1) Potri.014G023500 [exp] 289 / 1e-90 AT1G47056 636 / 0.0 VIER F-box proteine 1 (.1) Potri.007G048101 [exp] 265 / 8e-82 AT5G67250 581 / 0.0 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1) Potri.005G141800 [exp] 262 / 1e-80 AT5G67250 570 / 0.0 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1) Potri.016G128400 [exp] 58 / 2e-08 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.006G254100 [exp] 57 / 3e-08 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1) Potri.005G088800 [exp] 56 / 3e-08 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1) Potri.006G068500 [exp] 56 / 5e-08 AT2G25490 679 / 0.0 EIN3-binding F box protein 1 (.1) Potri.018G027700 [exp] 56 / 7e-08 AT2G25490 820 / 0.0 EIN3-binding F box protein 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018737 [exp] 287 / 6e-90 AT1G47056 638 / 0.0 VIER F-box proteine 1 (.1) Lus10011506 [exp] 248 / 4e-75 AT5G67250 566 / 0.0 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1) Lus10019319 [exp] 206 / 9e-60 AT5G67250 505 / 3e-176 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1) Lus10024798 [exp] 72 / 3e-14 AT1G47056 179 / 4e-54 VIER F-box proteine 1 (.1) Lus10012764 [exp] 62 / 1e-09 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10030102 [exp] 61 / 1e-09 AT2G25490 683 / 0.0 EIN3-binding F box protein 1 (.1) Lus10040998 [exp] 59 / 6e-09 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1) Lus10034013 [exp] 59 / 7e-09 AT2G20790 808 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10002165 [exp] 58 / 2e-08 AT2G25490 684 / 0.0 EIN3-binding F box protein 1 (.1) Lus10041648 [exp] 57 / 2e-08 AT1G80630 478 / 2e-163 RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Potri.006G081600.1 pacid=42770356 polypeptide=Potri.006G081600.1.p locus=Potri.006G081600 ID=Potri.006G081600.1.v4.1 annot-version=v4.1 ATGGGCCAATCCTCTTCTTCATGCTCGTGCAATAATGGCCATGAGATTTACAGGCCTGTTATCATTGGAAAAAACAGCGGTGATATTGATGGGGACGACG ACTTGACCCTGAGTCTTCCTGACGAGTGCCTGGGCAGTGTGTTTGGGAAGCTGGGTTGCCTTGACAGGAACTCTTGCTCTCTGGTTTGCAAGAGATGGAA ATGTGTGGATTCGAAGTCAAGAAACCGCCTTGTCTTGCTTGCTCGTTCCGAGTTGTCTCCATGCCTGCCTTCCTTGCTCTCTCGCTTCAACACCGTCTCC GTTCTGTCTCTCAAGTGCTCCCGCAAGCTCTTCAGCATAGACGATGCTGCCCTCTCTCGGATTCCCATCTTTCTCCCATTTCTCAAGAAGCTCAAACTCA AGGGCTGCATCCATATTTCTGACGATGGGCTGCATGCTTTCTCACTCCACCATCCCCCTCTCCTCACAAAACTGTCCTTTGCGTCCTGTGGTTTTGGTGC CAAAGGCCTCAACTCCCTTCTCTCTAATTGCCCTTCTCTCCAAGATCTCACCCTCAAGCGTCTAAGAAAGCTGGATGCCACTAGCAGTACCCCTGCATCG TCATTGTGGCCTGGAGCTTTGAATGTCGATGGTGGTGATGTTAGTAATGATCATCATAATAATATTAATGCTGTTGTTGCTGGAGATGCCAACAAGAAGG AGAAGGATGTTCACAATTACTACTACAAGAGGAGCCTGAGGCTAGAGCGGCTGTGCCTCAAAGATCTTCACAATGCTCGCCTTTTCATCCCTCTAATTCT CTCAGCTTCTGCTTCCATCAAAACCCTCATTGTTTGCAGGAGCTCCGGTAACTGGGACAGAGTCCTCGAGACTAGTCTCCATGGAAAAACCACTTCCATT TCTGAGATCCAGATGGAAAACGTCCAGATGGGCGATGCAGGCCTCTTGGCCATATCCTCTTCTTGCCCTGACCTCCAGCTTCTATACCTCAGCCGCACCA CTGATTGTACTGACGATGGGTTATCCGCAATTGCAAATTCTTGCAGGAAGCTTAGGAAGCTACATATCGATGCATGGAGCAGGTTCGGAAGCAGGACTAT TGGTGATGACGGGGTGTTTTCCATAGCCAACAAATGTTCCCAACTGCAGGAGGTGGTGCTTATGGGCATTCCAATAGCTATCCCATCTCTGAATGCCCTG GCTTCCAACTGCCCCGGACTTGAGCGGATGGCCCTCTGTAACACCGATTCTGTTCAGGATTCGGAAATGGCATTTATTGCTGCCAAGTTCCTGGCCTTGA AGAAGCTATGCATCAAGAACTGCCCCAATGTCTCAAAGTCAGGGATCGAAGCTGTTGGGCGCGGTTGCCCCAATTTGGTGAAGTTGAAGGTGAAGAGGTG CAAAGGGGTCACTCAGGCAATGGTGTCCAGATTGAGGTTCCAGAGGAGTTCGTTGGTGGTATCATTGGATGCAGGGTCAATGCTGTTTGAAAGTGGAGGA ATTTCATTACTAGCATCAGCAGTAAATGAAGAAGAGCAAGGAACCGCGACTGCAATGACAAACACTAATAGTACCAGGAGCGCAGCAGCAGCAGCAACAA CAGTAGCAGCAACTCATGTTATCTGCAGCAGCAGGGGTGCTCTCTTGCTCAGGTCTAAATTCGAAAGCGCTCTTCAACTTGGTAGGAGGAGGAGGCCAAC TGAAGATAATGCTAGTTGA
AA sequence Show only first row Show all	>Potri.006G081600.1 pacid=42770356 polypeptide=Potri.006G081600.1.p locus=Potri.006G081600 ID=Potri.006G081600.1.v4.1 annot-version=v4.1 MGQSSSSCSCNNGHEIYRPVIIGKNSGDIDGDDDLTLSLPDECLGSVFGKLGCLDRNSCSLVCKRWKCVDSKSRNRLVLLARSELSPCLPSLLSRFNTVS VLSLKCSRKLFSIDDAALSRIPIFLPFLKKLKLKGCIHISDDGLHAFSLHHPPLLTKLSFASCGFGAKGLNSLLSNCPSLQDLTLKRLRKLDATSSTPAS SLWPGALNVDGGDVSNDHHNNINAVVAGDANKKEKDVHNYYYKRSLRLERLCLKDLHNARLFIPLILSASASIKTLIVCRSSGNWDRVLETSLHGKTTSI SEIQMENVQMGDAGLLAISSSCPDLQLLYLSRTTDCTDDGLSAIANSCRKLRKLHIDAWSRFGSRTIGDDGVFSIANKCSQLQEVVLMGIPIAIPSLNAL ASNCPGLERMALCNTDSVQDSEMAFIAAKFLALKKLCIKNCPNVSKSGIEAVGRGCPNLVKLKVKRCKGVTQAMVSRLRFQRSSLVVSLDAGSMLFESGG ISLLASAVNEEEQGTATAMTNTNSTRSAAAAATTVAATHVICSSRGALLLRSKFESALQLGRRRRPTEDNAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G07400		VFB3	VIER F-box proteine 3 (.1)		Potri.006G081600 [exp]	0	1
AT2G27230	bHLH	LHW, bHLH156	LONESOME HIGHWAY, transcriptio...		Potri.001G086000 [exp]	3.16	0.7469
AT2G18500	OFP	ATOFP7, OFP7	ARABIDOPSIS THALIANA OVATE FAM...		Potri.007G028000 [exp]	4.12	0.7665
AT3G30380			alpha/beta-Hydrolases superfam...		Potri.008G112600 [exp]	14.49	0.7421
AT5G48720		XRI1, XRI	x-ray induced transcript 1 (.1...		Potri.002G244000 [exp]	20.34	0.7623
AT1G70550			Protein of Unknown Function (D...		Potri.008G188000 [exp]	20.56	0.7471
AT5G55250		AtIAMT1, IAMT1	IAA carboxylmethyltransferase ...		Potri.001G359000 [exp]	27.45	0.7278	IAMT1
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Potri.016G035300 [exp]	28.86	0.7543	PIN2,Pt-PIN2.3
AT1G45207			Remorin family protein (.2)		Potri.014G027900 [exp]	35.55	0.7481
AT5G67350			unknown protein		Potri.007G051800 [exp]	36.72	0.6836
AT5G09800			ARM repeat superfamily protein...		Potri.005G057500 [exp]	54.99	0.6940

Compare expression of checked genes

Potri.006G081600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.