Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24710 1894 / 0 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040563 [exp] 1318 / 0 AT5G24710 1338 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10028092 [exp] 899 / 0 AT5G24710 931 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10028093 [exp] 729 / 0 AT5G24710 758 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10040564 [exp] 645 / 0 AT5G24710 671 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G081800.4 pacid=42769664 polypeptide=Potri.006G081800.4.p locus=Potri.006G081800 ID=Potri.006G081800.4.v4.1 annot-version=v4.1 ATGCTGCGATTAAGAGCATTCAGACCCAGCAATGATAAGATCGTAAAGATTCAATTGCATCCTACGCATCCATGGCTTGTCACTGCCGATGCCTCCGATC GCGTCTCCGTTTGGAATTGGGAACACCGCCAGGTTATCTACGAGCTCAAAGCCGGCGGTGTCGACGAGAGACGTTTGGTCGGCGCCAAGTTGGAGAAGCT TGCTGAGGGTGAATCTGAGCCGAGAGGGAAGTCTACCGAAGCCATGCGTGGAGGGAGTGTGCAGCAGGTTAACTTTTATGATGATGATGTCCGGTTTTGG CAACTCTGGCGTAATCGGTCAGCCGCTGCGGAGGCTCCTTCCGCCGTCAGCAATGTAACTTCAGCATTTGCTTCTCCAGCTCCATCCACTAAAGGGAGAC ACTTCCTTGTCATCTGTTGTGTAAACAAAGCCATCTTTCTGGACTTGGTCACCATGCGTGGTCGTGATGTGCCTAAGCAAGAACTTGACAACAAGTCACT TATCTGTATGGAGTTTCTCTGCAGATCTACTGCTGGTGATGGTCCTCCACTAGTTGCATTTGGTGGATCTGATGGTGTCATCAGAGTTCTTTCAATGATA TCATGGACGCTTGTACGCAGATACACTGGAGGTCATAAAGGATCCATTTCTTGTTTGATGACCTTCATGGCTTCCTCTGGTGAGGCTCTTCTTGTTTCGG GTGGTAGTGATGGTTTACTTGTACTTTGGAGCGCAGACCATGGTCAAGATTCACGAGAACTTGTACCCAAGCTAAGCTTAAAAGCACATGATGGTGGGGT TGTCGCTGTTGAGCTTTCAAGAGTAATTGGAGGTGCCCCGCAACTTATTACCATTGGTGCAGATAAAACATTAGCTATATGGGACACAATCTCTTTTAAG GAGTTGCGGCGTATTAAACCTGTTCCAAAACTTGCATGCCACAGCGTGGCATCTTGGTGCCACCCTCGAGCTCCAAACCTAGATATCTTAACTTGCGTCA AAGATTCTCATATATGGGCCATTGAACACCCCACCTATTCAGCCCTTACAAGGCCATTGTGCGAGCTTTCTTCACTAATCCCTCCTCAAGCTCTTGCACC AAACAAGAAACTTAGGGTTTATTGCATGGTCGCACATCCTCTACAGCCCCACCTTGTTGCTACTGGAACCAATATTGGTGTTATTGTCAGCGAGTTTGAT GCTAGATCTATTCCAGCTGTGGCTCCCATACCAACACCAACAGGAAATCGAGAGCATTCTGCCATTTATGTAGTTGAAAGGGAATTGAAGCTTCTGAATT TCCAATTGTCCAACGCAGCAAATCCATCTCTTGGAAGTAATGGTTCATTATCTGAAACAGGAAAGTACAGGGGAGACTCGGCTGAACCATTACATGTCAA GCAGATGAAAAAGCATATCAGTACACCTGTTCCACATGATTCTTATTCAGTTCTTTCTGTAAGCAGTTCAGGGAAATATCTCGCAATTGTGTGGCCAGAT ATTCCTTACTTCACTATATACAAGGTGAGTGACTGGTCCGTTGTAGATTCAGGCAGTGCAAGGCTTCTGGCTTGGGATACCTGTCGTGATAGGTTTGCTA TATTGGAATCTGCATTGCCTCCTAGAATGCCAATAATTCCGAAAGGGGGTTCATCAAGAAAAGCAAAAGAAGCAGCTGCAGCTGCCGCACAAGCTGCAGC AGTGGCTGCTTCTGCTGCCTCTGCTGCCTCTGTGCAAGTTCGTATCTTGCTGGATGACGGAACGTCAAATATATTAATGAGGTCCATTGATGGTCGCAGT GAACCGGTTATTGGTTTGCATGGAGGGGCACTTCTAGGTGTGGCCTATCGAACATCTCGGAGGATTAGCCCTGTTGCAGCTACAGCTATTTCAACTATTC AGTCTATGCCCTTGTCAGGATTTGGAAGCGGTGGCCTTTCTTCTTTTACTACTCTCGATGATGGATTTAACTCTCACAAATCTCCTGCTGAGGCAGCCCC ACAAAACTTTCAGCTTTATAGTTGGGAAACTTTTCAACCTGTTGGTGGTCTACTTCCTCATCCAGAATGGACTGCATGGGACCAAACAGTTGAGTACTGT GCTTTTGCTTATCAGCACTATATTGTCATATCTTCTTTGCGGCCTCAATACAGATACCTTGGAGATGTTGCTATTCCCTATGCTACTGGAGCTGTTTGGC ATCGGAGACAGCTTTTTGTGGCCACACCAACTACCATTGAATGTGTTTTTGTAGATGCTGGAGTTGCAGCAATTGATATAGAAACAAGAAAGAGGAAAGA GGAAATGAAAATGAAAGAGGCACAGGCTAGAGCAGTTGCTGAGCATGGAGATTTAGCCCTAATTGCAGTAGATGGTCTGCAATCTGCTACCCAAGAACGA ATACCATTAAGGCCCCCAATGCTACAGGTAGTCCGGTTAGCTTCTTTTCAGCATGCTCCTTCGGTGCCACCTTTCTTAACATTGCCAAAACAGACTAAAG TTGATGGAGATGATTCAGCAATGCCAATAGAAGAGAAAAAAATTAATGAGATAGCTGTTGGTGGTGGAGGGGTCTCTGTGGCAGTTACTCGTTTTCCAAC AGAGCAGAAACGACCAGTAGGACCTCTAGTTGTGGTGGGTGTGAGAGATGGAGTTCTTTGGCTTATCGATAGGTACATGTGTGCACATGCCTTATCCCTA AGTCATCCTGGTATTCGTTGCCGCTGTCTTGCTGCTTATGGGGATGCTGTTAGTGCAGTGAAATGGGCAAGTAGGCTCGGTAGGGAACATCATGATGATT TGGCACAATTTATGATGGGGATGGGCTATGCTACTGAAGCACTGCATTTACCTGGAATATCTAAGAGGTTGGAGTTTGATCTGGCCATGCAAAGCAATGA TTTGAAAAGAGCTCTTCAGTGCCTTCTTACCATGAGCAACAGCAGGGACATAGGTCAAGATGGTATTGGGCTGGATTTGAATGACATTCTCAACATAACA GCTAAAAAAGAAAATATTGTTGAAGCTGTTCAAGGAATAGTGAAATTCGCAAGGGAATTTTTGGACCTCATTGATGCTGCGGATGCTACTGCTCAAGTTG ATATTGCTCGTGAAGCTCTCAAGAGGTTAGCCGCTGCAGGTTCTGTGAAAGGAGCCTTACAGGGCCATGAATTGAGAAGACTTGCTTTATGCCTGGCAAA TCATGGAGAGTTGACAAGGCTGAATGGTCTGGTTAGCAATTTGATTTCAGCTGGCCTGGGACGGGAAGCAGCATTTTCTGCTGCAGTGTTGGGAGACAAT GCTCTCATGGAAAAGTCATGGCAGGATACTGGGATGCTTGCTGAGGCTGTACTTCATGCCCATGCTCATGGACGGCCAACACTCAAGAACTTGGTTCAGG CTTGGAACAAAATGCTGCAGAAAGAGGTTGACCATGCTCCCTCTCAAAAGATAGATGCTGCATCTGCCTTTCTGGCTTCACTTGAAGAACCTAAGCTTAC CAGTTTAGCAGAAGCCGGGAAGAAGCCACCAATTGAAATTCTTCCACCGGGAATGCCATCTCTTTCTGCTCTAATTACCACTCAGAAAAAACTAACTCCT GGTATACAGAGTTCACAGCAGAAACCGTTACAATTAGAAGGTCCTCCCACTGCCACTCCTGAAGCAGTTATTGTATCTGCTGCAACCACAGCAACTTCAG AAGCTCCAGAAGATGCATCTGCTGCAACCACAACTACTTCAGCCGCTACAGAAAATGCACCTCCTAGCACTACACCAGAAGCAGGAAGTTCTCCACTGCC ATCAGAAGCAAGCAAACCTACTGTTGATGATAAGGCTCCTACTTCATCCCCAGGAAGTAATTCAGATCAAATTGCTCCAGTGGAAAGTATACCGGAAACA ATTGCAAGTGATTTGGCATTGCCACCACAAATACCAGATAACCAGGGAGCAAGTGTTCCAGCTAGTACTACATTGCCAATGAGTGATGTTCTAGGTTGA
AA sequence Show only first row Show all	>Potri.006G081800.4 pacid=42769664 polypeptide=Potri.006G081800.4.p locus=Potri.006G081800 ID=Potri.006G081800.4.v4.1 annot-version=v4.1 MLRLRAFRPSNDKIVKIQLHPTHPWLVTADASDRVSVWNWEHRQVIYELKAGGVDERRLVGAKLEKLAEGESEPRGKSTEAMRGGSVQQVNFYDDDVRFW QLWRNRSAAAEAPSAVSNVTSAFASPAPSTKGRHFLVICCVNKAIFLDLVTMRGRDVPKQELDNKSLICMEFLCRSTAGDGPPLVAFGGSDGVIRVLSMI SWTLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLVLWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVIGGAPQLITIGADKTLAIWDTISFK ELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSHIWAIEHPTYSALTRPLCELSSLIPPQALAPNKKLRVYCMVAHPLQPHLVATGTNIGVIVSEFD ARSIPAVAPIPTPTGNREHSAIYVVERELKLLNFQLSNAANPSLGSNGSLSETGKYRGDSAEPLHVKQMKKHISTPVPHDSYSVLSVSSSGKYLAIVWPD IPYFTIYKVSDWSVVDSGSARLLAWDTCRDRFAILESALPPRMPIIPKGGSSRKAKEAAAAAAQAAAVAASAASAASVQVRILLDDGTSNILMRSIDGRS EPVIGLHGGALLGVAYRTSRRISPVAATAISTIQSMPLSGFGSGGLSSFTTLDDGFNSHKSPAEAAPQNFQLYSWETFQPVGGLLPHPEWTAWDQTVEYC AFAYQHYIVISSLRPQYRYLGDVAIPYATGAVWHRRQLFVATPTTIECVFVDAGVAAIDIETRKRKEEMKMKEAQARAVAEHGDLALIAVDGLQSATQER IPLRPPMLQVVRLASFQHAPSVPPFLTLPKQTKVDGDDSAMPIEEKKINEIAVGGGGVSVAVTRFPTEQKRPVGPLVVVGVRDGVLWLIDRYMCAHALSL SHPGIRCRCLAAYGDAVSAVKWASRLGREHHDDLAQFMMGMGYATEALHLPGISKRLEFDLAMQSNDLKRALQCLLTMSNSRDIGQDGIGLDLNDILNIT AKKENIVEAVQGIVKFAREFLDLIDAADATAQVDIAREALKRLAAAGSVKGALQGHELRRLALCLANHGELTRLNGLVSNLISAGLGREAAFSAAVLGDN ALMEKSWQDTGMLAEAVLHAHAHGRPTLKNLVQAWNKMLQKEVDHAPSQKIDAASAFLASLEEPKLTSLAEAGKKPPIEILPPGMPSLSALITTQKKLTP GIQSSQQKPLQLEGPPTATPEAVIVSAATTATSEAPEDASAATTTTSAATENAPPSTTPEAGSSPLPSEASKPTVDDKAPTSSPGSNSDQIAPVESIPET IASDLALPPQIPDNQGASVPASTTLPMSDVLG

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24710			Transducin/WD40 repeat-like su...		Potri.006G081800 [exp]	0	1
AT3G50590			Transducin/WD40 repeat-like su...		Potri.007G041000 [exp]	1.00	0.9630
AT5G08390			Transducin/WD40 repeat-like su...		Potri.010G255400 [exp]	3.16	0.8952
AT1G73930			unknown protein		Potri.012G060200 [exp]	5.91	0.8616
AT2G38650		GAUT7, LGT7	LIKE GLYCOSYL TRANSFERASE 7, g...		Potri.006G114300 [exp]	8.06	0.8838
AT4G24840			unknown protein		Potri.012G096100 [exp]	8.48	0.8998
AT3G45850			P-loop containing nucleoside t...		Potri.001G233700 [exp]	10.09	0.9013
AT1G52360			Coatomer, beta' subunit (.1.2)		Potri.003G056300 [exp]	10.39	0.9043
AT4G16340		SPK1	SPIKE1, guanyl-nucleotide exch...		Potri.011G024000 [exp]	10.95	0.8879	Pt-SPIKE1.3
AT2G01600			ENTH/ANTH/VHS superfamily prot...		Potri.006G075800 [exp]	10.95	0.8705
AT5G15470		GAUT14	galacturonosyltransferase 14 (...		Potri.004G124500 [exp]	12.72	0.8877

Compare expression of checked genes

Potri.006G081800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.