Plant FIBer expression Database

Potri.006G082000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G28780 555 / 0 unknown protein
AT3G09450 523 / 4e-175 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G237300
[exp]
647 / 0 AT2G28780 785 / 0.0 unknown protein
Potri.009G028600
[exp]
639 / 0 AT2G28780 761 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024409
[exp]
738 / 0 AT2G28780 528 / 1e-176 unknown protein
Lus10025334
[exp]
648 / 0 AT3G09450 466 / 4e-154 unknown protein
Lus10005903
[exp]
532 / 6e-178 AT2G28780 720 / 0.0 unknown protein
Lus10040846
[exp]
511 / 3e-168 AT2G28780 680 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0307 FUSC PF13515 FUSC_2 Fusaric acid resistance protein-like
Representative CDS sequence
>Potri.006G082000.3 pacid=42768125 polypeptide=Potri.006G082000.3.p locus=Potri.006G082000 ID=Potri.006G082000.3.v4.1 annot-version=v4.1
ATGTCAGCAGCAACCGGAAAGGATTCAGTCAAGGCGTTGTGGCTTGAGCGCTTAAGCTCCTCTCTAAGGACCGCTTTGGCATGCACCATAGTTGGTTGCA
CCACCCTCTATGGCCCTGCAAGACTCAGGCACTTTCTTGCATATCCGGCCTTTTCTTACGTGACAGCAATCCTAATTGTCTCGGATGCTACTCTTGGTGA
CACTCTTAGAGGCTGTTGGCATGCACTGTATGCTACTGTCCAAGTAATGATCCCCTGTATACTGACCTTTCGAGTGATTGGACCAGCCAGGTTCAGTAAT
ATTGGCCTGGCAGCAGTGGCAGTGGCCATCACTACCTTCTTGGTGGCGCTGCCAGAATCAACTCCCTTGATGGCTAAGCGGATTGCATTTGGGCAGGCTG
TGATTGTGTTTGTAGGCGCAGCTATCCATGGTGCAGAAGAAGGAGTAGTCACGCACCCAATTCATGTGGCTTCAAGTACAGCCTTGGGAGCATTAGCTTC
TGTTTTGGCCATGCTGATTCCATACCCTTGGCTAGCGTACTGCAAGGCTAGGAAAACGTGCAGACTATATGTTGAAAATGCGTCAGAGAGATTGAATATC
TATGTAGAGGGCTTAACAGCCCAAAACAAGCAAGCTGCAGCTGACTTGCTTTCCCAAGCAAAGTTCCTCTCAGTAACAGGAGCCAAGCACCTTCAAACTA
TCAAAGATACTCGAGGAGGGATGGCATGTGAGAAACCACAAATCAGAAAGCTTAACGCAGGAGAAAATTTGCAAGACATCGAAATACTAATGAAAGGCGT
GGAAATTGCTCTTGATTCATGCCCTTCTTTTCCTGTTAGCATGATAGATGAAGGGATCAAACAAGCGTTACTCGATATGAAAGGAAAAATAGGCCTAAAG
CTGCAGAACGGCAAGTGCTTAACTCCTTTTGATGCAACAACAGCTCCGGAAGCAAAGGCTGGAGAAAGTTATGTTTTGGCCCCAAAAATTGGTGGCGCAA
CGCAGGCAGACCTACCAGCTTTCTTCTTTTTGTATTGCCTGGAACTCCTCTCGAGGGAATTGCCTGTTGGTCAAAATCCAGAGTGCAATTCAGAGAACAC
CAACAAAACTGATACTAGAGATGTAACCAGTAAAAGAGATCAAGAGAAGGCAAACCTTGGAAAGACTTGGGACTACTCAACTATAAAATTACCAAACATG
GAGAGGTGGACTCTTGCAACCAAGTGTTCACTTTCTATGGGTTTTGCTGTGCTATTCGGTTTGATATTCAACAAAGAAAACGGGTATTGGTCAGGACTCA
TCATTGCCACCAGTTTTGTCACGGAAAGACAAGCAACTTTTACAGTTGCGAATGCTCGTGGGCAAGGGACAGCGATAGGATCGGTTTATGGGATCCTGTG
TTGCTTCATTTTCCAAAGATTTGTGGACTTATGGTTTTTACCTCTTCTTCCATGGATCATTTTCACCAGTTTTCTAAGGCACAGCAGGATGTATGGCCAA
GCCGGCGGGATTTCAGCTGTGATAGGAGCATTATTAATCCTGGGTAGGAAAAATTATGGCCCTCCAAACGAGTTTGCAACTGCAAGACTCGTAGAAGCTT
GCATAGGATTGATTTGCTTCATTATGGCAGAGATTCTATTGCAACCCGCGAGAGCTGCAACTCTAGCAAAGACTGAATTTGCGTGGAGCTTGAGGGCACT
CCGAGATTGCATTGACGATACATCCCAGCTTTGTGCCGGCCAAAAGAGTGCGTTGTCATCTTCGATTCCAGCATTACGAAGAAAGCATCAAGAGGTGAAA
TCCCGCATCAACAACCTGGAGAAATTCATTGCTGCAGCCGAATCAGAGCCTAACTTCTGGTTCTTGCCTTTTTATGGTGCTTGTTATCGCAAATTACTGG
TTTCTTTAAGAAAGATGGAGTGCCTCTTGTTGTTCGTGGCCATTGAAATCGGAACTCTATCACAAGTATCAGATAGGTTACAAGTACTCATCAACAATTA
TCTACTTCCTTTGGGGGAAGAAGTAGGCTTTTCATTGAAATGTATTGAAGAGTTGGTTTCGATGAATTCCTTGGCGCTCCTGGAAAGGGGGGTGCAAAAG
ATAAGCATATCTCATGATGACATGGAGCTAGGAAAATCATCACCAAGTGCAGATGTACTATATAGGACTTTGAGTCTAGATGAAGAAGAAGTTGAGAATT
CCATTCCCCAACATTCAAAAGTAGAAGCTGACGGTATTGAAAAACGCGAAGGTGCACAGGAGCTCAAGAGCCGGTTGATCCTTCGCATATACAGCCTAGA
GTTCTGCATCAGTAGCCTGATAAAAGAAACGCGAGAGATTGAGAAACAAGTGAAAGAATTAATTACTAGGGAGAACCCAGAAAGCCAATTTTCCACAAAA
GAAGGATCCCACGGCGGCGGTTGA
AA sequence
>Potri.006G082000.3 pacid=42768125 polypeptide=Potri.006G082000.3.p locus=Potri.006G082000 ID=Potri.006G082000.3.v4.1 annot-version=v4.1
MSAATGKDSVKALWLERLSSSLRTALACTIVGCTTLYGPARLRHFLAYPAFSYVTAILIVSDATLGDTLRGCWHALYATVQVMIPCILTFRVIGPARFSN
IGLAAVAVAITTFLVALPESTPLMAKRIAFGQAVIVFVGAAIHGAEEGVVTHPIHVASSTALGALASVLAMLIPYPWLAYCKARKTCRLYVENASERLNI
YVEGLTAQNKQAAADLLSQAKFLSVTGAKHLQTIKDTRGGMACEKPQIRKLNAGENLQDIEILMKGVEIALDSCPSFPVSMIDEGIKQALLDMKGKIGLK
LQNGKCLTPFDATTAPEAKAGESYVLAPKIGGATQADLPAFFFLYCLELLSRELPVGQNPECNSENTNKTDTRDVTSKRDQEKANLGKTWDYSTIKLPNM
ERWTLATKCSLSMGFAVLFGLIFNKENGYWSGLIIATSFVTERQATFTVANARGQGTAIGSVYGILCCFIFQRFVDLWFLPLLPWIIFTSFLRHSRMYGQ
AGGISAVIGALLILGRKNYGPPNEFATARLVEACIGLICFIMAEILLQPARAATLAKTEFAWSLRALRDCIDDTSQLCAGQKSALSSSIPALRRKHQEVK
SRINNLEKFIAAAESEPNFWFLPFYGACYRKLLVSLRKMECLLLFVAIEIGTLSQVSDRLQVLINNYLLPLGEEVGFSLKCIEELVSMNSLALLERGVQK
ISISHDDMELGKSSPSADVLYRTLSLDEEEVENSIPQHSKVEADGIEKREGAQELKSRLILRIYSLEFCISSLIKETREIEKQVKELITRENPESQFSTK
EGSHGGG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G28780 unknown protein Potri.006G082000
[exp]
0 1
AT2G16050 Cysteine/Histidine-rich C1 dom... Potri.009G110500
[exp]
5.29 0.8562
AT3G23790 AAE16 acyl activating enzyme 16, AMP... Potri.001G321800
[exp]
5.83 0.8797
AT5G18130 unknown protein Potri.013G057200
[exp]
8.12 0.8773
AT2G20890 PSB29, THF1 THYLAKOID FORMATION1, photosys... Potri.013G148400
[exp]
14.49 0.8620
AT4G01970 RS4, ATSTS raffinose synthase 4, stachyos... Potri.014G118400
[exp]
16.00 0.8481
AT3G54200 Late embryogenesis abundant (L... Potri.016G142300
[exp]
17.23 0.8458
AT1G24490 ALB4, ARTEMIS ARABIDOPSIS THALIANA ENVELOPE ... Potri.008G182000
[exp]
17.32 0.8538
AT1G20560 AAE1 acyl activating enzyme 1 (.1.2... Potri.005G250700
[exp]
22.58 0.8515
AT3G17380 TRAF-like family protein (.1) Potri.017G049200
[exp]
27.98 0.7795
AT1G72510 Protein of unknown function (D... Potri.006G219100
[exp]
28.56 0.8312

Potri.006G082000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.