Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53670 52 / 3e-08 unknown protein AT2G37480 49 / 7e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024420 [exp] 104 / 3e-27 AT2G37480 67 / 1e-13 unknown protein Lus10003982 [exp] 100 / 3e-25 AT2G37480 91 / 2e-22 unknown protein Lus10023755 [exp] 99 / 6e-25 AT2G37480 90 / 4e-22 unknown protein Lus10025314 [exp] 97 / 3e-24 AT2G37480 62 / 9e-12 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G082100.2 pacid=42768724 polypeptide=Potri.006G082100.2.p locus=Potri.006G082100 ID=Potri.006G082100.2.v4.1 annot-version=v4.1 ATGAGCTCTCGTAGTCATGCTGTTGGTGATGTACTCGTGGATGAACTCGAAAGCAATCTTAGCAGGTTTGCAAGTTTAAAAGATGTTGAAGAAGAAACGT ATACATCTGATGGGGATGATAACAGCGATGCAGAAGAGGGATATGAACCATATGGGTCTCAACCTGTTAAAAAGTGCCATGATAATTCATCCTCTATGGC TCCTTCAGATGAAGAAGATAATGAACCCGAAACTGGGTTGCAACTATTGTTCCCTGAGGAGTTTCCTCGCTTGAACTCAACCCGTTTGCTTATTGTTTCT GCAATGAAAGGTAGCCGAGAAAAACAAGGAGGGTCACCAAGGAAACTGACGGTGTCATGGGCCCCAGATGTGTATGATCCAATTCCCAACTCCTTGTCTC ACAGTGTTAAAAGCAAGCAAAAGAAGTCGTCTAGGAAAGATAGAGATAAAGATAACAATCACAACAAGAAAAATGGAAAGAAAGGGCAGAAGGGTAGCTC ATCAAAAGGGCTAGGTGGCAAAGACAAGAAGCAATTTCGCAAATCTGGTGGCAGGTCTGACAAGTGCTATAAAACAATGGATGCTCCTGAAGACACTGAT TTTGGTGTTGGGAGCCCGGACTATTGTGGAAGTAGCTTCCTCAAAAATTCAGGTGCCAAGTTTCATTATTCTGTCGCGGAGGCATTATGA
AA sequence Show only first row Show all	>Potri.006G082100.2 pacid=42768724 polypeptide=Potri.006G082100.2.p locus=Potri.006G082100 ID=Potri.006G082100.2.v4.1 annot-version=v4.1 MSSRSHAVGDVLVDELESNLSRFASLKDVEEETYTSDGDDNSDAEEGYEPYGSQPVKKCHDNSSSMAPSDEEDNEPETGLQLLFPEEFPRLNSTRLLIVS AMKGSREKQGGSPRKLTVSWAPDVYDPIPNSLSHSVKSKQKKSSRKDRDKDNNHNKKNGKKGQKGSSSKGLGGKDKKQFRKSGGRSDKCYKTMDAPEDTD FGVGSPDYCGSSFLKNSGAKFHYSVAEAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G53670			unknown protein		Potri.006G082100 [exp]	0	1
AT5G07910			Leucine-rich repeat (LRR) fami...		Potri.015G048800 [exp]	1.41	0.7880
AT1G32230		ATP8, CEO1, RCD...	RADICAL-INDUCED CELL DEATH1, A...		Potri.001G137200 [exp]	3.00	0.7777	CEO1.2
AT4G30510		ATATG18B	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.018G101200 [exp]	3.00	0.7487
AT3G13060		ECT5	evolutionarily conserved C-ter...		Potri.014G001000 [exp]	3.16	0.7627
AT5G15080			Protein kinase superfamily pro...		Potri.017G077300 [exp]	4.89	0.8077
AT5G49710			unknown protein		Potri.002G104200 [exp]	9.89	0.7406
AT5G24870			RING/U-box superfamily protein...		Potri.018G005600 [exp]	14.69	0.7428
AT2G21470		EMB2764, ATSAE2...	EMBRYO DEFECTIVE 2764, SUMO-ac...		Potri.009G120200 [exp]	16.49	0.7506
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Potri.006G254100 [exp]	17.40	0.6663	EBF1.2,EBF3
AT5G15080			Protein kinase superfamily pro...		Potri.004G123800 [exp]	17.49	0.7592

Compare expression of checked genes

Potri.006G082100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.