Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53620 392 / 8e-141 ATPPA4 pyrophosphorylase 4 (.1) AT1G01050 360 / 2e-128 ATPPA1 pyrophosphorylase 1 (.1) AT2G46860 357 / 5e-127 ATPPA3 pyrophosphorylase 3 (.1) AT4G01480 345 / 2e-122 ATPPA5 pyrophosphorylase 5 (.1) AT2G18230 333 / 2e-117 ATPPA2 pyrophosphorylase 2 (.1) AT5G09650 77 / 1e-16 ATPPA6 pyrophosphorylase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G181300 [exp] 359 / 1e-127 AT1G01050 399 / 7e-144 pyrophosphorylase 1 (.1) Potri.014G107100 [exp] 358 / 2e-127 AT1G01050 404 / 1e-145 pyrophosphorylase 1 (.1) Potri.007G022700 [exp] 348 / 2e-123 AT1G01050 353 / 2e-125 pyrophosphorylase 1 (.1) Potri.009G081200 [exp] 77 / 7e-17 AT5G09650 450 / 4e-161 pyrophosphorylase 6 (.1) Potri.001G286900 [exp] 75 / 8e-16 AT5G09650 451 / 2e-161 pyrophosphorylase 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024422 [exp] 407 / 1e-146 AT3G53620 385 / 3e-138 pyrophosphorylase 4 (.1) Lus10025311 [exp] 409 / 2e-145 AT3G53620 387 / 1e-136 pyrophosphorylase 4 (.1) Lus10005139 [exp] 353 / 2e-125 AT1G01050 391 / 1e-140 pyrophosphorylase 1 (.1) Lus10030179 [exp] 353 / 2e-125 AT1G01050 391 / 1e-140 pyrophosphorylase 1 (.1) Lus10028320 [exp] 346 / 2e-122 AT2G46860 360 / 4e-128 pyrophosphorylase 3 (.1) Lus10041767 [exp] 346 / 2e-122 AT2G46860 359 / 5e-128 pyrophosphorylase 3 (.1) Lus10025999 [exp] 345 / 4e-122 AT1G01050 357 / 5e-127 pyrophosphorylase 1 (.1) Lus10014292 [exp] 344 / 6e-122 AT1G01050 356 / 1e-126 pyrophosphorylase 1 (.1) Lus10037239 [exp] 81 / 6e-18 AT5G09650 446 / 1e-159 pyrophosphorylase 6 (.1) Lus10035653 [exp] 79 / 2e-17 AT5G09650 446 / 2e-159 pyrophosphorylase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00719 [poplar] [flax] Pyrophosphatase Inorganic pyrophosphatase
Representative CDS sequence Show only first row Show all	>Potri.006G082500.1 pacid=42770481 polypeptide=Potri.006G082500.1.p locus=Potri.006G082500 ID=Potri.006G082500.1.v4.1 annot-version=v4.1 ATGGCTCCTCCTATTGAGACTCCCAGTAAACTTCCTATCTCTCGCCATTCCTCACACCCACCTCTTAATGAAAGGATACTTTCATCAATGAATAGGAGAT CTGTTGCTGCACATCCTTGGCATGATCTGGAGATTGGACCTGAAGCTCCAAAGATATTCAACTGTGTGGTTGAAATAGGGAAAGGGGGCAAGGTGAAATA TGAACTTGACAAAAAAACTGGACTGATCAAGGTTGACCGTGTGCTTTACTCTTCAGTTGTATATCCCCACAACTATGGTTTCATCCCCCGCACTCTTTGT GAGGACAATGATCCCATGGATGTCTTGATTATCATGCAGGAACCAGTTCTTTCAGGATGCTTTCTTCGCGCTAAAGCTATAGGACTGATGCCAATGATTG ATCAGGGTGAGAAAGATGACAAGATAATTGCGGTTTGTGCTGATGATCCTGAATACCGCCACTACAATGATATCAAGGAATTACCACCACATCGTTTAGC TGAGATCCGTCGCTTCTTTGAAGATTACAAGAAAAATGAGAACAAGGAGGTTGCTGTTAATGACTTTCTGCCGGCCTCTGATGCCTATGAGGCAATCCAG CATTCAATGAATCTTTATGCGGACTACATAGTGGAGAGCCTCAGGCGATAG
AA sequence Show only first row Show all	>Potri.006G082500.1 pacid=42770481 polypeptide=Potri.006G082500.1.p locus=Potri.006G082500 ID=Potri.006G082500.1.v4.1 annot-version=v4.1 MAPPIETPSKLPISRHSSHPPLNERILSSMNRRSVAAHPWHDLEIGPEAPKIFNCVVEIGKGGKVKYELDKKTGLIKVDRVLYSSVVYPHNYGFIPRTLC EDNDPMDVLIIMQEPVLSGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKELPPHRLAEIRRFFEDYKKNENKEVAVNDFLPASDAYEAIQ HSMNLYADYIVESLRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G53620		ATPPA4	pyrophosphorylase 4 (.1)		Potri.006G082500 [exp]	0	1
AT5G65650			Protein of unknown function (D...		Potri.007G027700 [exp]	4.24	0.6788
AT3G12100			Cation efflux family protein (...		Potri.016G045200 [exp]	5.47	0.6707
AT4G27720			Major facilitator superfamily ...		Potri.012G020500 [exp]	15.36	0.7002
AT4G25030			unknown protein		Potri.010G219900 [exp]	19.79	0.6840
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Potri.016G126400 [exp]	20.78	0.6368
AT3G54690		SETH3	Sugar isomerase (SIS) family p...		Potri.002G037400 [exp]	21.26	0.6944
AT1G05270			TraB family protein (.1)		Potri.017G038500 [exp]	22.97	0.6389
AT4G39220		ATRER1A	Rer1 family protein (.1)		Potri.007G047800 [exp]	24.37	0.6547
AT5G44790		HMA7, RAN1	copper-exporting ATPase / resp...		Potri.001G158900 [exp]	31.17	0.6902	Pt-RAN1.4
AT1G02130		ARA5, AtRABD2a,...	ARABIDOPSIS THALIANA RAB D2A, ...		Potri.003G081800 [exp]	31.93	0.6562	RAB1.6

Compare expression of checked genes

Potri.006G082500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.