Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37460 488 / 8e-174 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G39510 416 / 1e-145 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G37450 395 / 6e-138 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT4G08290 350 / 1e-119 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT1G21890 350 / 3e-119 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G44800 345 / 7e-118 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08300 342 / 2e-116 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G07050 340 / 3e-115 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G13670 338 / 4e-115 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G40900 309 / 3e-103 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G209200 [exp] 453 / 3e-160 AT2G39510 503 / 3e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G051500 [exp] 429 / 2e-150 AT2G39510 472 / 4e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G085100 [exp] 390 / 4e-135 AT1G21890 481 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176200 [exp] 376 / 1e-129 AT4G08300 465 / 2e-164 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.016G031400 [exp] 359 / 6e-123 AT5G07050 504 / 4e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G033500 [exp] 355 / 2e-121 AT5G07050 474 / 5e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176100 [exp] 353 / 3e-121 AT4G08290 427 / 2e-149 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.008G051400 [exp] 338 / 7e-115 AT5G13670 405 / 4e-141 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G032500 [exp] 333 / 1e-112 AT5G07050 530 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025308 [exp] 522 / 0 AT2G37460 487 / 4e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10024424 [exp] 519 / 0 AT2G37460 486 / 2e-172 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10007696 [exp] 488 / 1e-173 AT2G37460 464 / 1e-163 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10024425 [exp] 423 / 3e-147 AT2G37460 417 / 1e-144 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10023432 [exp] 414 / 2e-144 AT2G39510 480 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10040311 [exp] 412 / 3e-144 AT2G39510 482 / 2e-171 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10029465 [exp] 401 / 1e-139 AT2G39510 456 / 1e-160 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10005965 [exp] 398 / 3e-138 AT2G39510 465 / 2e-164 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10005964 [exp] 384 / 1e-132 AT2G39510 433 / 7e-152 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10003738 [exp] 382 / 4e-132 AT4G08300 453 / 6e-160 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF00892 [poplar] [flax] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Potri.006G082700.2 pacid=42767005 polypeptide=Potri.006G082700.2.p locus=Potri.006G082700 ID=Potri.006G082700.2.v4.1 annot-version=v4.1 ATGAATAGCTTTGATAGAGCAAAGCCCTTCGTTGCTGTAATATTCTTGCAAGTTGGGTTTGCAGGGATGGATATTCTGTCCAAGGCTGCGCTGAATCAAG GGATGAGCAATTATGTGCTTGTGGTGTATCGCCATGCCGTTGCCACTGTTGTCATTGCCCCCTTCGCAGCAATTCTAGACAAGAAACTCAGGCCGAAGAT GACTCTCTCAATCTTCATCAAGCTAGTAGCGCTCAGCTTACTGGAGCCTGTTATCGACCAAAACTTGTATTTTCTAGGGATGAAGTACACAACAGCAACA TTTGCCGCTGCTATTGTCAATGTTCTTCCTGCAATCACCTTTATAATCGCTTGGATCGTTAGGCTTGAGAAAGTGAAAATCGGATCTCTCCACAGCCAAG CTAAGCTGGCTGGGACCATAGCAACAGTTGCTGGAGCAATGTTGATGACACTAATGAAAGGCCCATTGATCGAGTTCTTTCGGATAAAAGGAAATGCTTA TCATGAAAACGGGACTGGTGGAATTGATCTCCATAGCTCAATCAAGGGTGCACTAATGATCACCGTGGGGTGCTTCAGCTGGGCCTGTTTCATGATTCTG CAAGCCATCACACTGAAATCCTATCCTGCAGAACTCTCTCTAACGGCTTGGATTTGCCTGCTTGGCACAATTGAGGGCGCCGTGGTGGCACTGGTAGCAG AAAACGGAAAACCTTCTGTCTGGGCTATAAACTGGGATATGAAATTACTTGCAGCCGTCTACAGTGGTATTTTCTGCTCAGGGCTAGCTTATTACATTCA AGGAATAGTAATGAAAGATCGAGGGCCCGTTTTCGTAACAGCTTTCAGTCCCTTGTGCATGGTTATTGTTGCTGTCATGAGCTGCATCATTTGGGCTGAG CAAATGTACCTGGGAAGGATACTCGGTGCCATTATCATAGTTGCAGGCCTATATCTTGTAGTATGGGGTAAAAGCAAGGACTACAAGACTTCATCCCCAC CGGCTGACGAGCAGACAATACCAGTAAAGCAAACAACAGTTGCGTGA
AA sequence Show only first row Show all	>Potri.006G082700.2 pacid=42767005 polypeptide=Potri.006G082700.2.p locus=Potri.006G082700 ID=Potri.006G082700.2.v4.1 annot-version=v4.1 MNSFDRAKPFVAVIFLQVGFAGMDILSKAALNQGMSNYVLVVYRHAVATVVIAPFAAILDKKLRPKMTLSIFIKLVALSLLEPVIDQNLYFLGMKYTTAT FAAAIVNVLPAITFIIAWIVRLEKVKIGSLHSQAKLAGTIATVAGAMLMTLMKGPLIEFFRIKGNAYHENGTGGIDLHSSIKGALMITVGCFSWACFMIL QAITLKSYPAELSLTAWICLLGTIEGAVVALVAENGKPSVWAINWDMKLLAAVYSGIFCSGLAYYIQGIVMKDRGPVFVTAFSPLCMVIVAVMSCIIWAE QMYLGRILGAIIIVAGLYLVVWGKSKDYKTSSPPADEQTIPVKQTTVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37460			nodulin MtN21 /EamA-like trans...		Potri.006G082700 [exp]	0	1
AT2G30070		ATKUP1, ATKT1P,...	POTASSIUM UPTAKE TRANSPORTER 1...		Potri.007G068200 [exp]	3.46	0.9772
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.004G179400 [exp]	7.74	0.9754
AT4G31980			unknown protein		Potri.003G209832 [exp]	10.19	0.9740
AT3G54110		ATUCP1, UCP1, U...	ARABIDOPSIS THALIANA UNCOUPLIN...		Potri.016G110100 [exp]	15.29	0.9178	UCP2.3
AT5G19090			Heavy metal transport/detoxifi...		Potri.014G140600 [exp]	15.81	0.9567
AT1G03670			ankyrin repeat family protein ...		Potri.013G133400 [exp]	15.87	0.9734
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.007G141125 [exp]	16.73	0.9719
AT5G38260			Protein kinase superfamily pro...		Potri.017G008600 [exp]	19.89	0.9583
AT1G54870			NAD(P)-binding Rossmann-fold s...		Potri.010G092400 [exp]	20.73	0.9705
AT3G18670			Ankyrin repeat family protein ...		Potri.015G118600 [exp]	24.73	0.9604

Compare expression of checked genes

Potri.006G082700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.