Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13660 261 / 2e-80 unknown protein AT5G59830 249 / 3e-77 unknown protein AT3G53680 162 / 2e-42 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G37520 155 / 4e-40 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G36720 78 / 6e-15 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G27980 78 / 7e-15 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G051300 [exp] 465 / 3e-158 AT5G13660 317 / 1e-100 unknown protein Potri.010G209300 [exp] 453 / 2e-153 AT5G13660 308 / 2e-97 unknown protein Potri.009G027800 [exp] 386 / 6e-130 AT5G59830 380 / 2e-129 unknown protein Potri.001G236000 [exp] 376 / 4e-126 AT5G59830 375 / 2e-127 unknown protein Potri.006G083600 [exp] 171 / 3e-45 AT2G37520 932 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.016G097300 [exp] 84 / 1e-16 AT2G36720 830 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.006G120200 [exp] 83 / 2e-16 AT2G36720 848 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.009G003900 [exp] 76 / 2e-14 AT2G27980 779 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.004G217600 [exp] 74 / 1e-13 AT2G27980 740 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024427 [exp] 551 / 0 AT2G37440 489 / 2e-162 DNAse I-like superfamily protein (.1.2) Lus10024426 [exp] 546 / 0 AT5G59830 231 / 1e-70 unknown protein Lus10025307 [exp] 545 / 0 AT5G59830 238 / 6e-73 unknown protein Lus10005889 [exp] 257 / 1e-79 AT5G59830 278 / 2e-89 unknown protein Lus10005963 [exp] 266 / 5e-78 AT5G13660 216 / 4e-60 unknown protein Lus10040857 [exp] 239 / 3e-73 AT5G59830 262 / 2e-83 unknown protein Lus10025315 [exp] 154 / 2e-39 AT2G37520 845 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10024419 [exp] 153 / 3e-39 AT2G37520 842 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10035553 [exp] 84 / 1e-16 AT2G36720 809 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10027738 [exp] 83 / 2e-16 AT2G36720 821 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF16135 [poplar] [flax] TDBD Tify domain binding domain
Representative CDS sequence Show only first row Show all	>Potri.006G082800.1 pacid=42767091 polypeptide=Potri.006G082800.1.p locus=Potri.006G082800 ID=Potri.006G082800.1.v4.1 annot-version=v4.1 ATGCAAATGTCTTTCCAGAATCAAGGTCTTTGGATGGTTAAAGGTGCTGAGTGTATAAATGATGGTGAAATTAATTACGATAATTCTTCTTCTAGAATTG AGTCAAAGCGTTCTCACCAGTGGTTGATGGATGGAGAGGCAGAACTATTTCCCAATAAGAAACAGGCAATCGGAGTTCCAACAAACAATTTATTTACAGG AATGCTAAGCACAAATGCTACCCCGTGGGGCAGTGCTTCTAGTTTTCAGTCAGTCTCTGGTCATTTCACCGAACGGTTTTTAGATTCTGAGACAAACAGG GCCGTTGATTTCGATGACAGAAGCATTGCATCAGTTAGCTCAGGAAAAATTAACAGCATAGGCAGGAAGTTAGACGAGCATCTATTTGGTAATGATTCCC CTTTTGGCTTATCTATGCCTCATATGTTGGAAGATCCAAGATCAGGTTTAAACTATGGCGGGATTAGAAAAGTGAAAGTTAGCCAGGTCAAGGAATCCGA GAATGCCATGCTTGCATCATTGGAACATGCCTTTAGTAGGGTGGATCGTAATACCATGTCAGTTGCTCAATCTTATGACAAAGATGAAAGTATCATATCG ATGGGTCTTGCTTATAACAAGCAGGATGAGAATGGCATGTCAACGGGTACTTATGACAGGGAGAATAACATTTTTATTTCAATGCGAAAACCCTGTAACA AGGGTGATGAACACATATCAATGAGTCAAACATACAAAGAAAATGGCAATGCCATACCAATGGGTCACACATTTAGCAATGGTGAGAACAATACCATATC TATGGGTCAAACCTACAGCAAGGTAGATGAAAATATCATCTCAATGGGGCACATGGGGCACATCTACAATAAAGGGAATAGTGGTATGGTATCGGTGGAT CAAACCTATGACAAAGATGGTAACAACAGTCTATCAATTGGCCAGTCACGTAATAAGGGAGAGAGTACTATAATATCCTTTGGGGGCTATGATGATGACG ACACAAATTGCTCAGGGAAGCTTACATCTAGCTATGAACTGTTGATGGCTCAGCCTTCTTTTCAAAGATCAGAAGTAAGAAATGATAATGAAGTGGTTAA ATCAAATGTGGACACACGTGTATCTGCTCTACATGTAGCTACCTCAAGGACTGATAATGTTTCTAAGAAAAAAGATGACATAAAAACAGCTAAGAAGCTT CCCTCAAACAACTTCCCTTCAAATGTTAGAAGTTTGCTGTCCACTGGCATGCTAGATGGAGTACCTGTAAAATATGTGGCATGGTCACAGGAGAAGGAGC TCCGTGGTGTTATAAAAGGTTCTGGATACTTATGTGGCTGTCAGACATGCAATTTCTCTAAGGTAGTTAATGCTTATGAATTTGAGCGGCATGCTAATTG CAAAACTAAACATCCAAATAATCACATATATTTTGAGAACGGGAAGACAATCTATGGCATTGTTCAAGAGCTAAGGAGTACACCTCAAAATATGTTGTTT GAAGTTATTCAGACGATAACCGGTTCACCTATCAACCAGAAGTCTTTTCGTCTTTGGAAAGAATCCTTTCTAGCTGCAACTCGTGAACTTCAACGAATAT ATGGAAAGGATGAAGGGAAGCCATCATAA
AA sequence Show only first row Show all	>Potri.006G082800.1 pacid=42767091 polypeptide=Potri.006G082800.1.p locus=Potri.006G082800 ID=Potri.006G082800.1.v4.1 annot-version=v4.1 MQMSFQNQGLWMVKGAECINDGEINYDNSSSRIESKRSHQWLMDGEAELFPNKKQAIGVPTNNLFTGMLSTNATPWGSASSFQSVSGHFTERFLDSETNR AVDFDDRSIASVSSGKINSIGRKLDEHLFGNDSPFGLSMPHMLEDPRSGLNYGGIRKVKVSQVKESENAMLASLEHAFSRVDRNTMSVAQSYDKDESIIS MGLAYNKQDENGMSTGTYDRENNIFISMRKPCNKGDEHISMSQTYKENGNAIPMGHTFSNGENNTISMGQTYSKVDENIISMGHMGHIYNKGNSGMVSVD QTYDKDGNNSLSIGQSRNKGESTIISFGGYDDDDTNCSGKLTSSYELLMAQPSFQRSEVRNDNEVVKSNVDTRVSALHVATSRTDNVSKKKDDIKTAKKL PSNNFPSNVRSLLSTGMLDGVPVKYVAWSQEKELRGVIKGSGYLCGCQTCNFSKVVNAYEFERHANCKTKHPNNHIYFENGKTIYGIVQELRSTPQNMLF EVIQTITGSPINQKSFRLWKESFLAATRELQRIYGKDEGKPS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13660			unknown protein		Potri.006G082800 [exp]	0	1
AT1G13960	WRKY	WRKY4	WRKY DNA-binding protein 4 (.1...		Potri.017G088300 [exp]	2.00	0.9101
AT5G35560			DENN (AEX-3) domain-containing...		Potri.006G143000 [exp]	2.23	0.8904
AT3G44600		AtCYP71, CYP71	cyclophilin 71, cyclophilin71 ...		Potri.009G146400 [exp]	2.82	0.9069
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Potri.005G222800 [exp]	4.00	0.8779	APG9.2
AT4G25880		APUM6	pumilio 6 (.1.2.3)		Potri.003G009900 [exp]	5.29	0.9006
AT1G80490		TPR1	TOPLESS-related 1 (.1.2)		Potri.006G257900 [exp]	6.00	0.8875
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Potri.008G078500 [exp]	6.70	0.9009
AT1G17440		CKH1, TAF12b, E...	TBP-ASSOCIATED FACTOR 12B, ENH...		Potri.003G064100 [exp]	8.06	0.8646
AT4G16110	GARP	ARR2	response regulator 2 (.1)		Potri.008G135500 [exp]	8.83	0.8444
AT4G14350			AGC (cAMP-dependent, cGMP-depe...		Potri.011G157000 [exp]	8.94	0.8616

Compare expression of checked genes

Potri.006G082800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.