Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37420 1219 / 0 ATP binding microtubule motor family protein (.1) AT3G45850 876 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G28620 827 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G36200 695 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G59540 241 / 7e-67 ZCF125 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G22610 242 / 4e-66 Di-glucose binding protein with Kinesin motor domain (.1.2) AT3G44050 235 / 2e-63 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G60930 233 / 9e-63 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G47820 232 / 1e-62 FRA1 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G72250 231 / 3e-62 Di-glucose binding protein with Kinesin motor domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G233700 [exp] 884 / 0 AT3G45850 1554 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.009G026000 [exp] 861 / 0 AT3G45850 1520 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.016G077800 [exp] 716 / 0 AT2G36200 1476 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.016G082400 [exp] 715 / 0 AT3G45850 1107 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G210700 [exp] 701 / 0 AT2G36200 1442 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.007G046700 [exp] 239 / 3e-65 AT5G47820 1422 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.005G150800 [exp] 241 / 4e-65 AT5G60930 1386 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G013300 [exp] 232 / 1e-63 AT1G59540 885 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.011G140000 [exp] 234 / 5e-63 AT1G72250 1201 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024429 [exp] 1352 / 0 AT2G37420 1266 / 0.0 ATP binding microtubule motor family protein (.1) Lus10025304 [exp] 1325 / 0 AT2G37420 1244 / 0.0 ATP binding microtubule motor family protein (.1) Lus10018120 [exp] 873 / 0 AT3G45850 1583 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10036146 [exp] 868 / 0 AT3G45850 1566 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10021340 [exp] 721 / 0 AT2G36200 1499 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10014216 [exp] 696 / 0 AT2G36200 1464 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10009073 [exp] 696 / 0 AT3G45850 1019 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10017016 [exp] 657 / 0 AT2G36200 1381 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10025275 [exp] 656 / 0 AT3G45850 981 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10035954 [exp] 240 / 2e-65 AT2G22610 1302 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Potri.006G082900.1 pacid=42769411 polypeptide=Potri.006G082900.1.p locus=Potri.006G082900 ID=Potri.006G082900.1.v4.1 annot-version=v4.1 ATGATGTCGCTGACTCCTGATCAATCTAGAAAGGTAGGGTTAGGCATGATGCCATCTCCAATTCCCTTCCTCACGCCGCGGCCGGAGAGGCGCCGCCATG AATCGAAAGGCCATGACTGGAATTCTGCTCGTCAGGACAAAGACAAAGAGGTGAACGTGCAAGTCGTACTAAGATGCAGACCCTTAAGTGATGAAGAGCA AAGAACGAATGTCTCCAAGGTGATAGCATGTAACGAGCATAAAAGAGAAGTCACTGTCTTGCATAGTATAGCTAACAAACAAGTAGATAGAGTTTTCACC TTTGACAAGGTTTTTGGGCCTAAAGCACAGCAGAGATCGATATATGATCAGGCCATTGCACCGATTGTTGAAGAGGTTCTTGAGGGTTTCAACTGCACAG TATTCGCATATGGGCAGACGGGTACCGGAAAGACGTTTACAATGGAGGGTGGAAAGAGAAATAAGGGTGGGGATTTGCCAGCCGAGGCTGGAGTTATTCC ACGAGCAGTTCGCCAAATTTTTGATACACTGGAGGCCCAAAATGCCGACTATAGCATCAAAGTGACATTTTTGGAGCTGTACAATGAAGAAATAACTGAT TTACTAGCTCAAGAAGACCCTTCAAGAAATGTAGAAGATAGGCAAAAGAAACCCATTTCTTTGATGGAGGATGGGAAGGGTTGTGTGTTTGTAAGAGGTC TTGAAGAAGAAGCTGTCTATAGTGCCAACGAAATTTACACTCTCTTAGAACGAGGAGCAGCCAAAAGGCGTACAGCAGATACATTGTTAAACAAGCGAAG CAGTCGCTCCCATTCTGTCTTTTCCATCACCATCCATGTTAAAGAAGCAGCTGTTGGAGAGGAGGAACTTATTAAATGTGGCAAACTTAATCTTGTTGAT TTGGCAGGATCAGAGAATATTTCTCGTTCAGGTGCAAGAGAGGGTCGTGCAAGAGAAGCAGGGGAGATTAACAAGAGCTTACTAACCCTGGGTCGTGTTA TAAATGCACTTGTGGAACATTCACCCCATATACCTTATAGGGATAGTAAGCTGACGAGGCTATTAAGAGATTCGTTGGGAGGAAGGACAAAAACATGCAT TGTTGCTACAATTTCCCCTTCTGCTCATGCTCTGGAAGAAACTCTAAGCACACTAGATTATGCATATCGGGCTAAAAGCATAAAAAACAAACCAGAGGCA AACCAAAGAGTATCCAAGGCTGTATTGCTCAAGGATCTCTACTTAGAAATTGAAAAGCTGAAAGAAGACGTTCGCGCAGCAAGGGAAAAAAATGGGGTTT ATGTTCCGCATGAGAAATTTGCCCAAGAGGAAGCTGAAAAGAAGTTGAGGATTGAGAAGATAGAGCAATTGGAGAATGAGCTCAGTCTCAGAGAGAATCA AGCTGATAGATATAACGAGCTTTATCTCACTGAGAAGGAAAAGAAAATTGATGTAGAAAGGGAGCTCATGGATTGTAAGATGAAGTTGGAAAAAAGTAAC AACGAAAGGTTGGATCTTGAGGAGAACCTTAGGGTAACCATTTCAACTCTAAAGGAAAAGGAGATCATCATCTCGAAGCTACTATCCTCAGAACATTCTT TAATTGAGCATGCAAAGGAGCTGTGTGTCGGTTTGCAAACTGCATCAGAGGATATAACTTCACTATTTGGCAGATTAGATCAGAAAGACATGATGGAAGT AGAAAATAGAAACATGGTTCTGACATTTGGTTCACATCTAGACCAGAGTTTAATTGACCTGCATAAGACAATCCTGGGGTCAGTTTCTGAACAACGGCAA CATCTAAGATGTATGGAAGAACATGTTGAATCATTCCTTGCGAGTAAAACCGATGCAACAGAAGTCTTGGAAACTAGGATAAAGAAAATGTCAGAGACAC ATGCTTCAGGAGTAGTAGCCTTGAACGAACTTGCCAATACAATGCAAAATAAAGCTTCCTCTGACTTACAACAGATAAATACTATAATCTCGTCTCAAAT GAGAACCGTTGAGCAATTTCTTGCCACCATGTTGTACGAGGCCAAGGAGGTTATTGAGGAGATCCATAGTTCTCTTGATGACCAAACACAGCTACTGGCT CTCTCCACTCAACAACAAGAGAAGGGATTACAGCGTAGTTTTGCTTCTGCTCAAGCAGTTTCAAAGGCGACAGTGGACTTCTACAATGATCTCCATCTTC GGGCTTCTGAGATCATGGCATTTCTTGAAGAAAGCCAAATCAAACAATCAGACCAACTATCTAATTTTGAGACGATATTTAAAGAGAAGGCTGCTAGAGA AGAAAAGGAAGCTTTGGAAAATATAGCAGTAATATTAGCATCATTGACTTCTAAGAAAACAGCTATGGTGTCAGAGGTATCAAGCGACATCTATGACACA AGGGTACGAGAAAATAAGATATTGCAGCGGGAATTATCCAACATGCAGAAGGCTTCATCTAATGCTAAGGAGGGGTTGAGTAAATATGTAGAAAAATTGG AAAGACATTTTATGGAAGACACATTCTCGGTAGCTGAATCAAAGGCTGTCATGGAAAATCTCCTCCAAGAATGTTCAGAAAAGGCAAACGATTCTAAGAA ACAATGGGAAAATGCTCATTCATACTTGAACAATTCCAAAGAGAGAACTGTTCTAGAGATAGAATCTGCTGTGAGGGATAGAGTAAATAAAAATCATGTT GCACATCAAGAATTTTTATCTGAATCCTCTGCTATGAAAGCAGATTTTGATGCCAGAATTGGTGATGTAATGGCTGCAGTTGATGATTCCATGATGCGGG ATCAAGAAACTAAGAAGGAAATAGACTCCATTACTTCCTTGTGCCTGGGTCAGCTCAAGTCAACACAAGAAAACCATGGTGATCGGATATCAAACATTAG AAGCAAGGCCGAGAAGTGTCTCACGAAAGATTATCTGGTTGATCAGAATTCCGGGACAACACCTAAAAGACGAGTTATAGCAGCAATACCTAGCTTGGAA TCCATTGAGGAAAGGAGAACAGTAGTGGCCTCGGAAAGTCCGAAGGAGCACGGGAATTTAGAGAAGAGAGCAAAGTGGAGCCCTGCGGAGAGCAAGATCC CAAGACATCATGCGGCGTCATTTAATAGAGCTCCTTTCACTGATGTCAACTGA
AA sequence Show only first row Show all	>Potri.006G082900.1 pacid=42769411 polypeptide=Potri.006G082900.1.p locus=Potri.006G082900 ID=Potri.006G082900.1.v4.1 annot-version=v4.1 MMSLTPDQSRKVGLGMMPSPIPFLTPRPERRRHESKGHDWNSARQDKDKEVNVQVVLRCRPLSDEEQRTNVSKVIACNEHKREVTVLHSIANKQVDRVFT FDKVFGPKAQQRSIYDQAIAPIVEEVLEGFNCTVFAYGQTGTGKTFTMEGGKRNKGGDLPAEAGVIPRAVRQIFDTLEAQNADYSIKVTFLELYNEEITD LLAQEDPSRNVEDRQKKPISLMEDGKGCVFVRGLEEEAVYSANEIYTLLERGAAKRRTADTLLNKRSSRSHSVFSITIHVKEAAVGEEELIKCGKLNLVD LAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEHSPHIPYRDSKLTRLLRDSLGGRTKTCIVATISPSAHALEETLSTLDYAYRAKSIKNKPEA NQRVSKAVLLKDLYLEIEKLKEDVRAAREKNGVYVPHEKFAQEEAEKKLRIEKIEQLENELSLRENQADRYNELYLTEKEKKIDVERELMDCKMKLEKSN NERLDLEENLRVTISTLKEKEIIISKLLSSEHSLIEHAKELCVGLQTASEDITSLFGRLDQKDMMEVENRNMVLTFGSHLDQSLIDLHKTILGSVSEQRQ HLRCMEEHVESFLASKTDATEVLETRIKKMSETHASGVVALNELANTMQNKASSDLQQINTIISSQMRTVEQFLATMLYEAKEVIEEIHSSLDDQTQLLA LSTQQQEKGLQRSFASAQAVSKATVDFYNDLHLRASEIMAFLEESQIKQSDQLSNFETIFKEKAAREEKEALENIAVILASLTSKKTAMVSEVSSDIYDT RVRENKILQRELSNMQKASSNAKEGLSKYVEKLERHFMEDTFSVAESKAVMENLLQECSEKANDSKKQWENAHSYLNNSKERTVLEIESAVRDRVNKNHV AHQEFLSESSAMKADFDARIGDVMAAVDDSMMRDQETKKEIDSITSLCLGQLKSTQENHGDRISNIRSKAEKCLTKDYLVDQNSGTTPKRRVIAAIPSLE SIEERRTVVASESPKEHGNLEKRAKWSPAESKIPRHHAASFNRAPFTDVN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37420			ATP binding microtubule motor ...		Potri.006G082900 [exp]	0	1
AT4G21270		KATAP, ATK1	KINESIN-LIKE PROTEIN IN ARABI...		Potri.004G031600 [exp]	4.12	0.9577	Pt-ATK1.1
AT1G03780		AtTPX2, TPX2	targeting protein for XKLP2 (....		Potri.017G013100 [exp]	5.47	0.9566
AT3G23890		ATTOPII, TOPII	topoisomerase II (.1.2)		Potri.001G264000 [exp]	5.74	0.9503	TOP2.2
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Potri.001G093700 [exp]	7.48	0.9449
AT4G21820			binding;calmodulin binding (.1...		Potri.004G017500 [exp]	11.40	0.9374
AT3G25690		AtCHUP1, CHUP1	Arabidopsis thaliana CHLOROPLA...		Potri.011G156500 [exp]	11.48	0.9097
AT1G18550			ATP binding microtubule motor ...		Potri.012G058400 [exp]	12.04	0.9497
AT4G17000			unknown protein		Potri.009G081900 [exp]	12.64	0.9498
AT3G23890		ATTOPII, TOPII	topoisomerase II (.1.2)		Potri.009G058900 [exp]	12.96	0.9466	TOP2.3
AT3G44050			P-loop containing nucleoside t...		Potri.009G156000 [exp]	15.09	0.9384

Compare expression of checked genes

Potri.006G082900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.