Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52750 647 / 0 FTSZ2-2 Tubulin/FtsZ family protein (.1) AT2G36250 640 / 0 ATFTSZ2-1, FTSZ2-1 Tubulin/FtsZ family protein (.1.2) AT5G55280 323 / 4e-106 ATFTSZ1-1, CPFTSZ, FTSZ1-1 CHLOROPLAST FTSZ, ARABIDOPSIS THALIANA HOMOLOG OF BACTERIAL CYTOKINESIS Z-RING PROTEIN FTSZ 1-1, homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1 (.1) AT1G75010 45 / 0.0001 ARC3 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3, GTP binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G203100 [exp] 607 / 0 AT2G36250 613 / 0.0 Tubulin/FtsZ family protein (.1.2) Potri.009G164100 [exp] 525 / 0 AT2G36250 524 / 0.0 Tubulin/FtsZ family protein (.1.2) Potri.001G359500 [exp] 325 / 2e-107 AT5G55280 547 / 0.0 CHLOROPLAST FTSZ, ARABIDOPSIS THALIANA HOMOLOG OF BACTERIAL CYTOKINESIS Z-RING PROTEIN FTSZ 1-1, homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021367 [exp] 616 / 0 AT3G52750 607 / 0.0 Tubulin/FtsZ family protein (.1) Lus10017047 [exp] 609 / 0 AT2G36250 597 / 0.0 Tubulin/FtsZ family protein (.1.2) Lus10014196 [exp] 548 / 0 AT3G52750 569 / 0.0 Tubulin/FtsZ family protein (.1) Lus10022718 [exp] 392 / 3e-135 AT3G52750 381 / 3e-131 Tubulin/FtsZ family protein (.1) Lus10016579 [exp] 325 / 2e-107 AT5G55280 535 / 0.0 CHLOROPLAST FTSZ, ARABIDOPSIS THALIANA HOMOLOG OF BACTERIAL CYTOKINESIS Z-RING PROTEIN FTSZ 1-1, homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1 (.1) Lus10002442 [exp] 276 / 2e-88 AT5G55280 479 / 6e-169 CHLOROPLAST FTSZ, ARABIDOPSIS THALIANA HOMOLOG OF BACTERIAL CYTOKINESIS Z-RING PROTEIN FTSZ 1-1, homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1 (.1) Lus10035091 [exp] 66 / 4e-11 AT1G75010 559 / 0.0 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3, GTP binding (.1) Lus10031930 [exp] 61 / 2e-09 AT1G75010 549 / 0.0 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3, GTP binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0566 [poplar] [flax] Tubulin PF00091 [poplar] [flax] Tubulin Tubulin/FtsZ family, GTPase domain CL0442 [poplar] [flax] Tubulin_C PF12327 [poplar] [flax] FtsZ_C FtsZ family, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.006G083100.4 pacid=42770625 polypeptide=Potri.006G083100.4.p locus=Potri.006G083100 ID=Potri.006G083100.4.v4.1 annot-version=v4.1 ATGGCAGCTTGTGTTTCACCATACTGTACACTTGGTGATAGTAGAAAGCCGATGGGGATGTTAAGTGTTGTTGGAGCGAGAATGAGAGTGTCAACGGAAA ATCATTTGGGGATGGGGAGATTTGGGTCTCTGAAAATGACCGAGTCCAAGTCCAAGTCTAAGTCTAAGTCTAATAATTTACCCCAATGTATTAGTAAAAT CCCCGAACAATATCAAAACAGCAGCAGCAAGGACCCTTTTCTTAATCTTCATCCCGAAGTATCAATGCTTAGAGTTAGAGGTGAGGAGGGGAACAACAAA GTAACCACCACCGCCCCTGCAAGGAATGGCTCTAGTCCAAGTAATCACAATGAAGCCAACATAAAAGTCATTGGTGTTGGAGGTGGAGGCTCCAACGCAG TCAATCGCATGATTGAAAGTTCAATGAAAGGTGTAGAGTTTTGGGTTGTAAACACAGATGTTCAATCCATGAGCATGTCTCCCGTCTTCCCCGAAAATCG TTTGCAAATTGGTCAGGACCTTACTAGAGGTCTTGGAGCTGGGGGTAATCCAGAAATTGGGATGAACGCTGCTAAAGAAAGCAAACAAGCAATAGAAGAG GCAGTTTATGGTGCTGACATGGTCTTTGTCACCGCTGGAATGGGCGGAGGAACTGGTACTGGCGGGGCTCCTATAATTTCAGGTGTTGCAAAGTCAATGG GTATATTGACTGTTGGTATTGTCACTACCCCATTTTCTTTTGAGGGACGGAGAAGGGCAGTTCAGGCCCAGGAAGGAATTGCAGCTTTGAGAGACAACGT TGACACACTGATTGTCATTCCAAATGACAAATTATTGACTGCTGTTTCCCAAACTACCCCAGTAACAGAAGCATTTAACCTGGCAGATGATATTCTGCGA CAGGGTGTTCGTGGTATCTCTGATATCATTACGGTTCCTGGATTGGTGAATGTGGATTTTGCTGATGTGCGAGCTATAATGGCAAATGCAGGCTCCTCGC TAATGGGGATAGGGATTGCAACTGGGAAAACAAGGGCAAGAGATGCAGCATTAAATGCAATCCAGTCACCTTTATTAGATATTGGCATAGAGAGGGCAAC TGGAATTGTGTGGAACATAACTGGTGGAAGTGATTTAACTTTATTTGAGGTAAATGCTGCAGCAGAGGTTATTTATGACCTTGTAGATCCTACTGCCAAT TTAATTTTTGGAGCAGTGATAGATCCATCACTCAGTGGCCAAGTAAGTATAACTCTAATTGCAACTGGATTCAAGCGTCAAGAAGAAAATGAAGGCAGGC CTTTCCAGGCAAGTCAGCTAGCACCAGGAGAAGTCACCTCTGGAATCAATCGGCGACCTTCCACTTTCACTGAAGGTGGTTCGGTGGAGATTCCTGAGTT TCTCAAGAAGAAGGGTCGCTCTCGCTATCCCAGAGCTTAA
AA sequence Show only first row Show all	>Potri.006G083100.4 pacid=42770625 polypeptide=Potri.006G083100.4.p locus=Potri.006G083100 ID=Potri.006G083100.4.v4.1 annot-version=v4.1 MAACVSPYCTLGDSRKPMGMLSVVGARMRVSTENHLGMGRFGSLKMTESKSKSKSKSNNLPQCISKIPEQYQNSSSKDPFLNLHPEVSMLRVRGEEGNNK VTTTAPARNGSSPSNHNEANIKVIGVGGGGSNAVNRMIESSMKGVEFWVVNTDVQSMSMSPVFPENRLQIGQDLTRGLGAGGNPEIGMNAAKESKQAIEE AVYGADMVFVTAGMGGGTGTGGAPIISGVAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIAALRDNVDTLIVIPNDKLLTAVSQTTPVTEAFNLADDILR QGVRGISDIITVPGLVNVDFADVRAIMANAGSSLMGIGIATGKTRARDAALNAIQSPLLDIGIERATGIVWNITGGSDLTLFEVNAAAEVIYDLVDPTAN LIFGAVIDPSLSGQVSITLIATGFKRQEENEGRPFQASQLAPGEVTSGINRRPSTFTEGGSVEIPEFLKKKGRSRYPRA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G52750		FTSZ2-2	Tubulin/FtsZ family protein (....		Potri.006G083100 [exp]	0	1
AT2G18570			UDP-Glycosyltransferase superf...		Potri.007G030500 [exp]	3.46	0.7764	Pt-CGT5.1
AT3G51660			Tautomerase/MIF superfamily pr...		Potri.006G104800 [exp]	5.47	0.7664
AT1G15290			Tetratricopeptide repeat (TPR)...		Potri.003G031000 [exp]	7.93	0.7621
AT5G19620		TOC75-V, EMB213...	translocon at the outer envelo...		Potri.003G204900 [exp]	10.29	0.8012
AT1G33540		SCPL18	serine carboxypeptidase-like 1...		Potri.001G291700 [exp]	11.04	0.7878
AT2G18790		OOP1, HY3, PHYB	OUT OF PHASE 1, phytochrome B ...		Potri.010G145900 [exp]	12.68	0.7653
AT5G57970			DNA glycosylase superfamily pr...		Potri.018G106900 [exp]	14.45	0.7458
AT5G54140		ILL3	IAA-leucine-resistant (ILR1)-l...		Potri.012G007400 [exp]	14.59	0.7861
AT5G10630			Translation elongation factor ...		Potri.018G006500 [exp]	18.16	0.7079
AT3G52270			Transcription initiation facto...		Potri.010G219800 [exp]	30.00	0.7679

Compare expression of checked genes

Potri.006G083100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.