Plant FIBer expression Database

Potri.006G083300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G36305 382 / 1e-133 RCE1, ATFACE2, ATFACE-2 RAS-CONVERTING ENZYME 1, ARABIDOPSIS THALIANA FARNESYLATED PROTEIN-CONVERTING ENZYME 2, ARABIDOPSIS THALIANA FARNESYLATED PROTEIN-CONVERTING ENZYME-2, farnesylated protein-converting enzyme 2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022724
[exp]
351 / 5e-121 AT2G36305 300 / 8e-101 RAS-CONVERTING ENZYME 1, ARABIDOPSIS THALIANA FARNESYLATED PROTEIN-CONVERTING ENZYME 2, ARABIDOPSIS THALIANA FARNESYLATED PROTEIN-CONVERTING ENZYME-2, farnesylated protein-converting enzyme 2 (.1)
Lus10014190
[exp]
345 / 1e-119 AT2G36305 291 / 1e-98 RAS-CONVERTING ENZYME 1, ARABIDOPSIS THALIANA FARNESYLATED PROTEIN-CONVERTING ENZYME 2, ARABIDOPSIS THALIANA FARNESYLATED PROTEIN-CONVERTING ENZYME-2, farnesylated protein-converting enzyme 2 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0472 Peptidase_U PF02517 CPBP CPBP intramembrane metalloprotease
Representative CDS sequence
>Potri.006G083300.4 pacid=42767597 polypeptide=Potri.006G083300.4.p locus=Potri.006G083300 ID=Potri.006G083300.4.v4.1 annot-version=v4.1
ATGGAACAAGAAACGGGTTTGTCGAAACCAGTGGCGGTGATAGCCTGTGCAACCATGGCATTCCTTTATGTTGCCATTCTCTATGCTCCCACTTTGATTC
TGCGCCTCCCGGCTCCTTCTTCTCTCAAGGAATTTATGATCCGACGGTTCATATGCGCCACCATTTCTTCATTCATGTCCCTTGTTTTCTGTGCTATCCT
CCTCCCTTTGAGGAGAAGGGAGGCAACTTACTTGTTCCGCGTATATGGCATCAGACTGGACCATCTTTGGCAAGCTGTGGTCTTTCCTCTTTCGTTGACT
TGTTTAATGTACGCTGGATCTTTGGTCTTTAAGTCATTATTGTTGGTGGATTCATGGAAGGAACACATGCATCAGGGTGAAGGAATTTCTTTAAACTGTA
TCAAAGATATCCTGCAGAACTTTCTTGCCGGGCTGTCTTCAACTGCCTCCAATGTCTTGGCTTGGCGTAATTATGTTGTGGCTCCATTAACAGAGGAATT
GGTGTTCAGAGCATGTATGATACCTTTACTTCTCTGTGGAGGGTTTGAGATCTATGTTGTCATTTTACTCTGCCCCATTCTCTTTAGCTTGGCACATCTA
AACCATTGGATGGAGATCTATGGCCGTCAAAACTATAGCTTGCTCAAGGCATTCATGGTTGTAGGTCTTCAGCTAGGTTACACTGTGATCTTCGGTTCAT
ATGCATCTTTTCTTTTCATTCGAACAGGACATCTTGTTGCTCCATTAGTTGCTCATATATTTTGCAATTTTATGGGATTGCCTGTGCTGTTTGTGAGGAG
GACAGGGATGGTGAGCTTAGCATTCATTGCTGGAACTGTAGCCTTCATATGTCTTCTTTGTCCTGTAACACAGCCTCATTTGTACAATGATGGGACAAAT
GACTGTGAATGCTGGCAAGGATATTGTTCCTCGAACTTAAACTCCTAA
AA sequence
>Potri.006G083300.4 pacid=42767597 polypeptide=Potri.006G083300.4.p locus=Potri.006G083300 ID=Potri.006G083300.4.v4.1 annot-version=v4.1
MEQETGLSKPVAVIACATMAFLYVAILYAPTLILRLPAPSSLKEFMIRRFICATISSFMSLVFCAILLPLRRREATYLFRVYGIRLDHLWQAVVFPLSLT
CLMYAGSLVFKSLLLVDSWKEHMHQGEGISLNCIKDILQNFLAGLSSTASNVLAWRNYVVAPLTEELVFRACMIPLLLCGGFEIYVVILLCPILFSLAHL
NHWMEIYGRQNYSLLKAFMVVGLQLGYTVIFGSYASFLFIRTGHLVAPLVAHIFCNFMGLPVLFVRRTGMVSLAFIAGTVAFICLLCPVTQPHLYNDGTN
DCECWQGYCSSNLNS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G36305 RCE1, ATFACE2, ... RAS-CONVERTING ENZYME 1, ARABI... Potri.006G083300
[exp]
0 1
AT4G04320 malonyl-CoA decarboxylase fami... Potri.004G005500
[exp]
6.92 0.6260
AT2G29900 PS2 Presenilin-2 (.1) Potri.015G058301
[exp]
9.59 0.6602
AT5G03290 IDH-V isocitrate dehydrogenase V (.1... Potri.006G126700
[exp]
11.35 0.6607
AT5G39040 AtALS1, ABCB27,... ARABIDOPSIS THALIANA TRANSPORT... Potri.017G097200
[exp]
11.66 0.5786
AT3G20970 ATNFU2, NFU4 ARABIDOPSIS THALIANA NFU DOMAI... Potri.010G237400
[exp]
12.24 0.7035 NFU4.2
AT1G68310 AE7 AS1/2 ENHANCER7, Protein of un... Potri.001G135800
[exp]
16.97 0.6087
AT1G03250 unknown protein Potri.019G046400
[exp]
18.11 0.6233
AT4G35190 LOG5 LONELY GUY 5, Putative lysine ... Potri.002G012500
[exp]
23.74 0.6171
AT2G02470 Alfin AL6 alfin-like 6 (.1.2) Potri.004G230500
[exp]
26.40 0.6051
AT5G11500 unknown protein Potri.018G037800
[exp]
37.04 0.5841

Potri.006G083300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.