Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36310 534 / 0 NSH1, URH1 nucleoside hydrolase 1, uridine-ribohydrolase 1 (.1) AT1G05620 323 / 1e-109 NSH2, URH2 nucleoside hydrolase 2, uridine-ribohydrolase 2 (.1.2) AT5G18870 49 / 3e-06 NSH5 nucleoside hydrolase 5, Inosine-uridine preferring nucleoside hydrolase family protein (.1) AT5G18890 45 / 5e-05 NSH4 nucleoside hydrolase 4, Inosine-uridine preferring nucleoside hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G144600 [exp] 324 / 3e-110 AT1G05620 524 / 0.0 nucleoside hydrolase 2, uridine-ribohydrolase 2 (.1.2) Potri.008G197500 [exp] 51 / 9e-07 AT5G18860 1106 / 0.0 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1) Potri.008G197400 [exp] 44 / 0.0002 AT5G18860 1196 / 0.0 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003251 [exp] 565 / 0 AT2G36310 540 / 0.0 nucleoside hydrolase 1, uridine-ribohydrolase 1 (.1) Lus10035601 [exp] 561 / 0 AT2G36310 536 / 0.0 nucleoside hydrolase 1, uridine-ribohydrolase 1 (.1) Lus10042608 [exp] 327 / 3e-111 AT1G05620 521 / 0.0 nucleoside hydrolase 2, uridine-ribohydrolase 2 (.1.2) Lus10022062 [exp] 314 / 3e-106 AT1G05620 506 / 0.0 nucleoside hydrolase 2, uridine-ribohydrolase 2 (.1.2) Lus10012778 [exp] 47 / 2e-05 AT5G18860 1091 / 0.0 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01156 [poplar] [flax] IU_nuc_hydro Inosine-uridine preferring nucleoside hydrolase
Representative CDS sequence Show only first row Show all	>Potri.006G083400.1 pacid=42768235 polypeptide=Potri.006G083400.1.p locus=Potri.006G083400 ID=Potri.006G083400.1.v4.1 annot-version=v4.1 ATGGACGGCGTTTTGGGTTCGGAGACGGAAAGCCACGTTATTATGGACGGGACGGTGAACATTTTTCACGGAGAAAGGGATGGCGTGTTGGCTGGCTCCA CTGCTAAGCCTGAAAAACTAATTATCGATACTGATCCTGGGATCGATGATACCATGGCGATCTTGATGGCTTTTCAATCTCCTGAGTTGGAGGTCTTAGG ATTGACCACAATATTTGGTAATGTCTCCACAGAAGATGCCACTCGAAATGCTTTACTTTTGTGTGAGATCGCAGGGCGTCCAGATGTTCCTGTCGCTGAG GGCAGTCCAGAGCCTCTCAAGGGTGGAATCCCAACTGTACCTGACTTTATTCATGGTTCTGATGGATTGGGGAACACATTTCTTTCTCCTCCAAAAGCAA AGAAAATTGGCAAGAGTGCTTCCGAATTTTTATTGGATAAAGTATCTGAGTATCCTGGTGAAGTATCTATACTAGCACTAGGACCACTAACTAACCTAGC TTTGGCGATCAAAAGGGACTCCTCCTTTGCTAGCAAGGTAAAAAGAATTGTTGTACTTGGAGGTGCATTCTTTGCACTGGGAAATGTAAACCCTGCTGCC GAGGCAAATATCCATGGGGACCCAGAAGCAGCAGACTTGGTGTTTACCTCCGGGGCCAACATCGTTGTGGTTGGAATAAATATTACAACCCAAGTTAAAT TCACAGATGGGGACCTTCTTGAATTGAGGCAATCCAAAGGGAAGTATGCTAAAATACTAAGTGACATGTGCAAATTCTATAGAGATTGGCATGTGAAGTC CGATGGTGTCTATGGCATTTTTCTCCACGACCCTGTGAGTTTTGTAGCTCTAGTTCGGCCCGATCTCTTCACATACAAGAACGGTGTCGTGAGGGTTGAG ACACAGGGCATCTGTGCTGGGCATACGCTGATGGACCAAGGACTCAAGAGATGGAACTCGAGCAACCCCTGGTCAGGGTTTTCTCCTGTTGCAGTTGCTT GGACTGTTACTGTGGATGAAGTACTCAATTACGTCAGACAATTGTTGATGAAATAA
AA sequence Show only first row Show all	>Potri.006G083400.1 pacid=42768235 polypeptide=Potri.006G083400.1.p locus=Potri.006G083400 ID=Potri.006G083400.1.v4.1 annot-version=v4.1 MDGVLGSETESHVIMDGTVNIFHGERDGVLAGSTAKPEKLIIDTDPGIDDTMAILMAFQSPELEVLGLTTIFGNVSTEDATRNALLLCEIAGRPDVPVAE GSPEPLKGGIPTVPDFIHGSDGLGNTFLSPPKAKKIGKSASEFLLDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKRIVVLGGAFFALGNVNPAA EANIHGDPEAADLVFTSGANIVVVGINITTQVKFTDGDLLELRQSKGKYAKILSDMCKFYRDWHVKSDGVYGIFLHDPVSFVALVRPDLFTYKNGVVRVE TQGICAGHTLMDQGLKRWNSSNPWSGFSPVAVAWTVTVDEVLNYVRQLLMK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G36310		NSH1, URH1	nucleoside hydrolase 1, uridin...		Potri.006G083400 [exp]	0	1
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Potri.010G070750 [exp]	5.47	0.7391
AT3G11397		PRA1.A3	prenylated RAB acceptor 1.A3 (...		Potri.008G060400 [exp]	9.21	0.7173
AT4G27650		PEL1	PELOTA, Eukaryotic release fac...		Potri.005G204500 [exp]	9.38	0.7384	PEL1.2
AT5G64560		MRS2-2, ATMGT9	magnesium transporter 9 (.1.2)		Potri.008G161400 [exp]	11.61	0.6986
AT4G31130			Protein of unknown function (D...		Potri.018G000600 [exp]	11.83	0.7335
AT1G29800			RING/FYVE/PHD-type zinc finger...		Potri.011G071900 [exp]	12.40	0.7322
					Potri.006G083850 [exp]	16.43	0.7567
AT4G00355		ATI2	ATG8-interacting protein 2, un...		Potri.014G086000 [exp]	17.86	0.6936
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Potri.010G166200 [exp]	23.49	0.7585
AT1G03905		ABCI19	ATP-binding cassette I19, P-lo...		Potri.002G036300 [exp]	25.09	0.6867	POP.2

Compare expression of checked genes

Potri.006G083400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.