Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-TAFII58.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10070 299 / 2e-95 TAF12, TAFII58 TATA-ASSOCIATED FACTOR II 58, TBP-associated factor 12 (.1) AT1G17440 125 / 1e-30 CKH1, TAF12b, EER4 TBP-ASSOCIATED FACTOR 12B, ENHANCED ETHYLENE RESPONSE 4, CYTOKININ-HYPERSENSITIVE 1, Transcription initiation factor TFIID subunit A (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G169900 [exp] 138 / 5e-35 AT1G17440 267 / 2e-80 TBP-ASSOCIATED FACTOR 12B, ENHANCED ETHYLENE RESPONSE 4, CYTOKININ-HYPERSENSITIVE 1, Transcription initiation factor TFIID subunit A (.1.2) Potri.003G064100 [exp] 136 / 4e-34 AT1G17440 266 / 1e-79 TBP-ASSOCIATED FACTOR 12B, ENHANCED ETHYLENE RESPONSE 4, CYTOKININ-HYPERSENSITIVE 1, Transcription initiation factor TFIID subunit A (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003250 [exp] 344 / 2e-112 AT3G10070 325 / 8e-105 TATA-ASSOCIATED FACTOR II 58, TBP-associated factor 12 (.1) Lus10035601 [exp] 306 / 3e-93 AT2G36310 536 / 0.0 nucleoside hydrolase 1, uridine-ribohydrolase 1 (.1) Lus10006528 [exp] 133 / 2e-33 AT1G17440 280 / 4e-86 TBP-ASSOCIATED FACTOR 12B, ENHANCED ETHYLENE RESPONSE 4, CYTOKININ-HYPERSENSITIVE 1, Transcription initiation factor TFIID subunit A (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [poplar] [flax] Histone PF03847 [poplar] [flax] TFIID_20kDa Transcription initiation factor TFIID subunit A
Representative CDS sequence Show only first row Show all	>Potri.006G083500.1 pacid=42767058 polypeptide=Potri.006G083500.1.p locus=Potri.006G083500 ID=Potri.006G083500.1.v4.1 annot-version=v4.1 ATGGACCGACCAGCCCCCACCACCTCCACCTCTACTCCCCCCATCACTAAGCAACCTACGGAACCACCACCATCTCAACCACTACCGCAACCGCAACCGC AACCACAACCACAACCACAACCATCCTCCTCCACGGCCTCTCCAAACCCTAATCTTAACCCCAACCCACCCACAAAACCTTCAATATCAGCAGCAACAAC AATCACCACCACCCCCAGCAGCACAAGGCCTCAGACAGTGCACAGGCCATGGCAGCACCCCCACCCCCACTCCCAATTCCCGTCTGTTTCTTCGGGCCCT CCTATACCATCCTCCTCCAGCACGACCCCTTCTATTTCTTCGCCACGCGGTGTTGCCCTAGGTGTTCCCGCGCCTTCTCCCGCGTCCTTTTCTTCTTCAT TTGGTCACCAGTTTGTTGGATTGAACCGCGCTCCTGTCAACGTGCCTGAGTCCGTAGCCAACACCAGCAACTCGCAGGTGAGGCAAGGGGTGATGGCTTC AATGGCGTCGAATTCTCAAATGCGACCACATCAACAGAGACCTGTTCAATCATCTCTTCGACCACCCACTTCTTCCCCAAATACCCAAAATTTCCCAGGG CATGTATTTATAAGATCCACACCAGTAGGTACAGCAGGTTCTCCTGTGCCAAACACATCGCAAAGTTTGCAGTCCCCCAATCAGCTGTGGTTGTCATCTG CATCTCAAGGGAAGCCTCCATTGCCTTCCCCTTCATATAGACCTCAGATGAACTCTCCGTCACTGCAACAAAGGTCACACATTCCACCACAGCATCATTC CCCACCGACAACTTCACAGCAACAGCACATGTCACCTGCACAGCCACAACAACCTTTACAATCCCATCAACAACCAGAGCATTATGGCCAGCAATTTCCA CCATCAAGAGTCCAACAATCCTTATCCCCTCTGCAACAAGTTTCAAGGGTTCAAGGTTCAGTAAATCATAAGCCATCTTCCCTAGCAATGTCACATCCTA ACACAGTACAACCATTGCCGCAGAATAGTATAGCTAATGCAGAAAGTGATGAATCTGGTAACCGGATTCTTAGCAAAAGAAGCATTCATGAGCTAGTTAG TCAGATTGATCCATCAGAGAAGTTCAATCCTGAAGTTGTAGAGATTCTAGCAGATATAGCAGATGAATTTCTTGTGTCTGTCACAACATTTGGTTGCTCA TTGGCCAAGCATCGAAAATCAGATACATTGGAAGCGAAAGACATACTTCTACATCTTGACAGAAACTGGAATATGACACTACCAGGGTTCTGTGGTGATG AGATTAAGAGCTACAGAAAACAAGTAACAAACGATATCCACAAGGAGCGCCTTGCGGCGATAAAGAAGTCAATATTGACATCTGAGATGGCAAACGCTAA GAACTCTGTGGGACAAGCTGCTGGAAATGCAAAGAGTAGCACGACAAAGACCTTGTCAAATCCCATTGTCTCCCCTAACCTGAAAGTTACATGA
AA sequence Show only first row Show all	>Potri.006G083500.1 pacid=42767058 polypeptide=Potri.006G083500.1.p locus=Potri.006G083500 ID=Potri.006G083500.1.v4.1 annot-version=v4.1 MDRPAPTTSTSTPPITKQPTEPPPSQPLPQPQPQPQPQPQPSSSTASPNPNLNPNPPTKPSISAATTITTTPSSTRPQTVHRPWQHPHPHSQFPSVSSGP PIPSSSSTTPSISSPRGVALGVPAPSPASFSSSFGHQFVGLNRAPVNVPESVANTSNSQVRQGVMASMASNSQMRPHQQRPVQSSLRPPTSSPNTQNFPG HVFIRSTPVGTAGSPVPNTSQSLQSPNQLWLSSASQGKPPLPSPSYRPQMNSPSLQQRSHIPPQHHSPPTTSQQQHMSPAQPQQPLQSHQQPEHYGQQFP PSRVQQSLSPLQQVSRVQGSVNHKPSSLAMSHPNTVQPLPQNSIANAESDESGNRILSKRSIHELVSQIDPSEKFNPEVVEILADIADEFLVSVTTFGCS LAKHRKSDTLEAKDILLHLDRNWNMTLPGFCGDEIKSYRKQVTNDIHKERLAAIKKSILTSEMANAKNSVGQAAGNAKSSTTKTLSNPIVSPNLKVT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10070		TAF12, TAFII58	TATA-ASSOCIATED FACTOR II 58, ...		Potri.006G083500 [exp]	0	1	Pt-TAFII58.1
AT1G48110		ECT7	evolutionarily conserved C-ter...		Potri.010G152300 [exp]	1.41	0.9226
AT3G19895			RING/U-box superfamily protein...		Potri.010G171100 [exp]	2.00	0.9097
AT1G14650			SWAP (Suppressor-of-White-APri...		Potri.005G094600 [exp]	2.23	0.8962
AT5G65180			ENTH/VHS family protein (.1.2)		Potri.007G086700 [exp]	3.46	0.8946
AT3G26850			histone-lysine N-methyltransfe...		Potri.018G051900 [exp]	3.74	0.8871
AT1G09710	MYB		Homeodomain-like superfamily p...		Potri.002G106500 [exp]	4.00	0.9209
AT5G02850			hydroxyproline-rich glycoprote...		Potri.016G084200 [exp]	4.24	0.8689
AT3G08020			PHD finger family protein (.1)		Potri.009G059700 [exp]	6.32	0.8841
AT5G57740		XBAT32	XB3 ortholog 2 in Arabidopsis ...		Potri.006G176600 [exp]	8.60	0.8490
					Potri.017G152420 [exp]	10.81	0.8819

Compare expression of checked genes

Potri.006G083500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.