Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37520 931 / 0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT3G53680 878 / 0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G36720 506 / 5e-165 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G27980 464 / 5e-148 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT4G14920 186 / 3e-48 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT5G59830 161 / 1e-42 unknown protein AT1G05380 167 / 3e-42 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1.2) AT3G14980 166 / 1e-41 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT5G13660 161 / 1e-41 unknown protein AT5G58610 154 / 4e-38 PHD finger transcription factor, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G097300 [exp] 558 / 0 AT2G36720 830 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.006G120200 [exp] 509 / 2e-166 AT2G36720 848 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.009G003900 [exp] 508 / 2e-166 AT2G27980 779 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.004G217600 [exp] 485 / 5e-157 AT2G27980 740 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.009G016832 [exp] 249 / 2e-77 AT2G37520 149 / 1e-41 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.010G087700 [exp] 199 / 3e-52 AT4G14920 805 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.008G152600 [exp] 197 / 1e-51 AT4G14920 769 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.001G236000 [exp] 173 / 8e-47 AT5G59830 375 / 2e-127 unknown protein Potri.002G118600 [exp] 180 / 1e-46 AT5G58610 436 / 5e-137 PHD finger transcription factor, putative (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024419 [exp] 974 / 0 AT2G37520 842 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10025315 [exp] 968 / 0 AT2G37520 845 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10027738 [exp] 550 / 0 AT2G36720 821 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10035553 [exp] 545 / 3e-177 AT2G36720 809 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10016160 [exp] 311 / 8e-92 AT2G37520 355 / 3e-106 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10006110 [exp] 199 / 2e-52 AT4G14920 868 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10042283 [exp] 196 / 2e-51 AT3G08590 993 / 0.0 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1.2) Lus10010562 [exp] 189 / 3e-49 AT4G14920 847 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10015266 [exp] 185 / 1e-47 AT5G58610 558 / 7e-176 PHD finger transcription factor, putative (.1) Lus10024426 [exp] 167 / 3e-44 AT5G59830 231 / 1e-70 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [poplar] [flax] zf-FYVE-PHD PF00628 [poplar] [flax] PHD PHD-finger CL0390 [poplar] [flax] PF16135 [poplar] [flax] TDBD Tify domain binding domain
Representative CDS sequence Show only first row Show all	>Potri.006G083600.8 pacid=42767405 polypeptide=Potri.006G083600.8.p locus=Potri.006G083600 ID=Potri.006G083600.8.v4.1 annot-version=v4.1 ATGGTTTATGTGGATATATCAGCAGCAGCAGCAGCAGCAGCAGATGTGAGTATGGTAGCTGCAAAAGGTGATTTGAAGAGAGAGCGTAATCCATTTCCGG TGAATGAGAATGAGACCGGGGAATTATTTCCTAACAAGAAACAAGCAAAACAAGAAGAAGCTTCAAACGACGACACAAAATCTGAAGTTTCGAATCCTGT AATAACACTAGTTTCTCCTAAAGGCAACGGATCATCATCCCATGATATCTCTGAAGAATCGCCTACGAATGCGTGCCCCTCTTCAGAGGAGACTCTGACT GTGAGCCAGGAAGGAGGTGGTAGCAGCAGTGAAGATAACACCTCCAATCAAAGTCCTCGAAATGATACTTGTGATTCTGTCTCTATGTCTCCTGTTGTGT TGGAGATTCCTGAGCATGCTAGTACCACGGGAGTTAGGAAGATTACTTTTAAGTTCAGCAAAAGAAAAGAGGATTATGATACCAAAATTTCGCCTCACCC TCTACATGGTGGAATTGATCAAGGACTGCTGTATCATCGTAATGGGGATTATTATCCAAGGAACCACTCTGTTTGGGTTAATTCCTGCACAGAAATGCCT CAGACCAGAGAAAGATATATGGAGTTGAACATGTCTAAGAAGGTCGTTCCCAACAACTACCCTACGAATGTCAAAAAGTTGTTAGCAACTGGTATTCTCG ATAGGGCTCGAGTCAAGTATATTTGTTTTTCTTCAGAGCGAGAGCTTGATGGAATTATAGACGGCGGTGGATATTTGTGTGGCTGTTCGTCATGTAATTT CTCCAAAGTCCTTAGTGCATATGAATTTGAGCAGCATGCTGGTGCTAAAACTAGACATCCAAACAATCACATATACTTGGAGAATGGGAAACCAATTTAT AGCATTATTCAAGAACTAAAAACGGCTCCACTCAGCATGATAGATGGAGTCATAAAAGACGTGGCTGGTTCATCTATCAATGAGGAGTTCTTCCGGGTTT GGAAAGCTAGTCTTAATCAAAGCAATGCACTTGTTGGAGCAGATAAAAAATGTCACAGCGAACTGCCTTGTTTGCCTCATTCTCATGTAAGCTACGCTAG TCAAGCTTTGAAAGAAAGCTTTTGCCCAATTTCAAGCTCCTTTTTGTATAATAACAACTTTGTCAGCCAGCAAATGTATATGGAGACTTCAGGCGTGAAT AAGCAAACATCGAAGAGGCCTAGCCTTTACTTCCCTGGCTCTGCTACGAAGCAAAAGAAAACAGCTGAGAGTGGTGTCAGGAAGAGGGATAATGATCTTC ACAGGTTACTCTTTATGCCGAATGGTCTTCCAGATGGGACCGAATTGGCTTACTATGTCAAAGGGCAGAAAATACTAGGGGGTTACAAGCAGGGTAATGG TATTGTCTGTAGTTGTTGTGAAGTAGAGATTAGCCCTTCACAGTTTGAGTCTCATGCTGGAATGTCTGCCAGGCGTCAACCCTACCGTCACATTTATACT TCTAATGGACTGACCCTCCATGATATAGCTATTTCGTTGGCAAATGGACAAAACATTACCACAGGTATTGGTGATGATATGTGTGCAGAATGTGGAGATG GAGGGGATCTAATGTTTTGTCAGAGTTGCCCTCGTGCTTTTCATGCAGCATGTTTGGATTTACATGATACTCCTGAAGGTGCTTGGCATTGTCCAAATTG CAATAAACTTGGCCACGGAGGCAATTTTGCAAGACCTATTGTCATCCGGCTGACTCGAGTTGTTAAAACTCCAGAATATGATGTTGGTGGTTGTGCTGTT TGCAGGGCCCATGATTTTAGTGGCGATACATTTGATGACCGAACAGTTATCCTTTGTGACCAATGCGAAAAGGAATTTCATGTTGGTTGCTTGCGGGAAA GTGGACTATGTGATCTAAAAGAAATCCCCAAAGATAATTGGTTCTGCTGTCAAGACTGCAATAATATCTATGTAGCTCTCCGGAATTCTGTTTCTACTGG AGTGCAGACAATTCCCGCTTCGCTGTTAAATATCATAAATAGAAAGCATGTCGAGAAAGGGCTACTTGTTGATGAAGCTGCATATGATGTGCAGTGGCAA ATTCTGATGGGAAAGAGTCGCAACCGAGAAGATCTTTCATTGCTTTCAGGGGCTGCTGCAATTTTTCGAGAGTGTTTTGATCCTATTGTTGCAAAAACTG GCCGTGATCTGATTCCTGTTATGGTCTATGGGAGAAATATATCTGGCCAGGAATTTGGGGGCATGTATTGTGTGCTTTTGACTGTAAGGCATGTTGTTGT GTCTGCTGGTCTTCTTAGGATTTTCGGTAGGGAGGTTGCCGAGCTTCCTTTAGTGGCCACAAACAGAGAGCATCAAGGGAAAGGTTATTTCCAAGCATTA TTCTCGTGCATTGAGAGGTTATTGTGCTCCCTGAATGTGGAACAACTGGTGCTCCCAGCTGCTGAGGAAGCAGAATCAATCTGGACAAGAAGATTTGGCT TCAGAAAGATGAGTGAGGGACAATTGTTGAAGTATACAAGGGAGTTTCAGCTGACGATTTTCAAGGGAACATCCATGCTCGAGAAGGAAGTCCCACGGAT AATTGATTAG
AA sequence Show only first row Show all	>Potri.006G083600.8 pacid=42767405 polypeptide=Potri.006G083600.8.p locus=Potri.006G083600 ID=Potri.006G083600.8.v4.1 annot-version=v4.1 MVYVDISAAAAAAADVSMVAAKGDLKRERNPFPVNENETGELFPNKKQAKQEEASNDDTKSEVSNPVITLVSPKGNGSSSHDISEESPTNACPSSEETLT VSQEGGGSSSEDNTSNQSPRNDTCDSVSMSPVVLEIPEHASTTGVRKITFKFSKRKEDYDTKISPHPLHGGIDQGLLYHRNGDYYPRNHSVWVNSCTEMP QTRERYMELNMSKKVVPNNYPTNVKKLLATGILDRARVKYICFSSERELDGIIDGGGYLCGCSSCNFSKVLSAYEFEQHAGAKTRHPNNHIYLENGKPIY SIIQELKTAPLSMIDGVIKDVAGSSINEEFFRVWKASLNQSNALVGADKKCHSELPCLPHSHVSYASQALKESFCPISSSFLYNNNFVSQQMYMETSGVN KQTSKRPSLYFPGSATKQKKTAESGVRKRDNDLHRLLFMPNGLPDGTELAYYVKGQKILGGYKQGNGIVCSCCEVEISPSQFESHAGMSARRQPYRHIYT SNGLTLHDIAISLANGQNITTGIGDDMCAECGDGGDLMFCQSCPRAFHAACLDLHDTPEGAWHCPNCNKLGHGGNFARPIVIRLTRVVKTPEYDVGGCAV CRAHDFSGDTFDDRTVILCDQCEKEFHVGCLRESGLCDLKEIPKDNWFCCQDCNNIYVALRNSVSTGVQTIPASLLNIINRKHVEKGLLVDEAAYDVQWQ ILMGKSRNREDLSLLSGAAAIFRECFDPIVAKTGRDLIPVMVYGRNISGQEFGGMYCVLLTVRHVVVSAGLLRIFGREVAELPLVATNREHQGKGYFQAL FSCIERLLCSLNVEQLVLPAAEEAESIWTRRFGFRKMSEGQLLKYTREFQLTIFKGTSMLEKEVPRIID

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37520			Acyl-CoA N-acyltransferase wit...		Potri.006G083600 [exp]	0	1
AT3G16785		PLDZ1, PLDZETA1...	PHOSPHOLIPASE D ZETA1, PHOSPHO...		Potri.010G006300 [exp]	2.23	0.7725
AT5G57870		eIFiso4G1	eukaryotic translation Initiat...		Potri.018G104100 [exp]	3.87	0.7290
AT5G10790		UBP22	ubiquitin-specific protease 22...		Potri.018G123200 [exp]	6.78	0.7058
AT3G43240	ARID		ARID/BRIGHT DNA-binding domain...		Potri.018G064500 [exp]	10.00	0.7518
AT5G55060			unknown protein		Potri.011G089300 [exp]	22.58	0.7098
AT1G18260		HRD3A, EBS5	EMS-mutagenized bri1 suppresso...		Potri.015G038100 [exp]	25.57	0.7551
AT4G01400			unknown protein		Potri.014G105900 [exp]	25.59	0.7455
AT1G52320			unknown protein		Potri.001G181100 [exp]	26.83	0.7164
AT2G27285			Coiled-coil domain-containing ...		Potri.009G162500 [exp]	28.35	0.7360
AT2G01480			O-fucosyltransferase family pr...		Potri.010G111500 [exp]	33.85	0.7446

Compare expression of checked genes

Potri.006G083600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.