Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ASP1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53710 498 / 8e-175 AGD6 ARF-GAP domain 6 (.1.2) AT2G37550 484 / 2e-169 ASP1, AGD7 yeast pde1 suppressor 1, ARF-GAP domain 7 (.1.2) AT4G17890 129 / 3e-33 UBP20, AGD8 ARF-GAP domain 8 (.1.2) AT5G46750 129 / 4e-33 AGD9, AGD8 ARF-GAP domain 9 (.1) AT2G35210 123 / 4e-31 RPA, AGD10, MEE28 MATERNAL EFFECT EMBRYO ARREST 28, root and pollen arfgap (.1.2) AT5G54310 100 / 1e-22 NEV, AGD5 NEVERSHED, ARF-GAP domain 5 (.1) AT3G17660 96 / 3e-22 AGD15 ARF-GAP domain 15 (.1) AT4G05330 97 / 5e-22 AGD13 ARF-GAP domain 13 (.1) AT4G21160 94 / 7e-21 ZAC, AGD12 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) AT3G07940 90 / 2e-19 Calcium-dependent ARF-type GTPase activating protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G095100 [exp] 637 / 0 AT3G53710 462 / 9e-161 ARF-GAP domain 6 (.1.2) Potri.001G142100 [exp] 130 / 3e-33 AT4G17890 535 / 0.0 ARF-GAP domain 8 (.1.2) Potri.003G092300 [exp] 124 / 5e-31 AT4G17890 525 / 0.0 ARF-GAP domain 8 (.1.2) Potri.004G035800 [exp] 98 / 9e-22 AT5G54310 333 / 2e-109 NEVERSHED, ARF-GAP domain 5 (.1) Potri.012G036900 [exp] 94 / 1e-21 AT3G17660 260 / 4e-88 ARF-GAP domain 15 (.1) Potri.011G127000 [exp] 97 / 3e-21 AT5G54310 466 / 4e-161 NEVERSHED, ARF-GAP domain 5 (.1) Potri.011G044100 [exp] 96 / 5e-21 AT5G54310 347 / 3e-115 NEVERSHED, ARF-GAP domain 5 (.1) Potri.011G098500 [exp] 94 / 7e-21 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Potri.001G406300 [exp] 95 / 9e-21 AT5G54310 400 / 6e-135 NEVERSHED, ARF-GAP domain 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003978 [exp] 465 / 4e-162 AT2G37550 516 / 0.0 yeast pde1 suppressor 1, ARF-GAP domain 7 (.1.2) Lus10023765 [exp] 456 / 1e-157 AT2G37550 507 / 4e-178 yeast pde1 suppressor 1, ARF-GAP domain 7 (.1.2) Lus10023766 [exp] 451 / 2e-156 AT2G37550 485 / 4e-170 yeast pde1 suppressor 1, ARF-GAP domain 7 (.1.2) Lus10003977 [exp] 187 / 6e-56 AT2G37550 215 / 4e-67 yeast pde1 suppressor 1, ARF-GAP domain 7 (.1.2) Lus10038317 [exp] 159 / 1e-46 AT2G37550 166 / 5e-50 yeast pde1 suppressor 1, ARF-GAP domain 7 (.1.2) Lus10000903 [exp] 126 / 4e-32 AT4G17890 469 / 3e-165 ARF-GAP domain 8 (.1.2) Lus10004562 [exp] 126 / 8e-32 AT4G17890 512 / 0.0 ARF-GAP domain 8 (.1.2) Lus10004561 [exp] 122 / 9e-31 AT4G17890 451 / 2e-158 ARF-GAP domain 8 (.1.2) Lus10004125 [exp] 112 / 7e-28 AT4G17890 283 / 4e-94 ARF-GAP domain 8 (.1.2) Lus10012991 [exp] 98 / 2e-24 AT3G53710 103 / 5e-27 ARF-GAP domain 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01412 [poplar] [flax] ArfGap Putative GTPase activating protein for Arf
Representative CDS sequence Show only first row Show all	>Potri.006G084000.2 pacid=42768357 polypeptide=Potri.006G084000.2.p locus=Potri.006G084000 ID=Potri.006G084000.2.v4.1 annot-version=v4.1 ATGGCGGCTTCCAGGCGTCTTCGGGAGCTCCAATCGCAACCAGCCAATAAGATCTGCGTCGACTGTTCCCAAAAGAACCCACAGTGGGCTTCTGTTTCTT ACGGTGTCTTCATGTGCTTAGAGTGCTCCGGCAAACACCGTGGCCTCGGTGTCCACATCTCCTTCGTCCGATCCGTCACCATGGATTCCTGGTCCGAGAT CCAGATCAAGAAGATGGAATCCGGCGGAAATGACAAGCTGAATGCCTTCTTAGCTCAATACGGTATCCCTAAAGAAACAGATATCGTAGCCAAATACAAC ACTAACGCCGCTAGCGTTTATCGTGATCGGATCCAAACACTAGCGGATGGAAGATCTTGGAGGGACCCACCGGTCGTTAAAGAAACTATTGGTAGCAAGA AAAAGCCCCCGCTGTCTCAATCTGGTTCTGCCGGCGGTGGCAGAGATAGTTATTCTAGTAATAATGGAGGGTGGGATAATTGGGATAACGATGATTCGCT TGGATCTTCTTCTAGTGATGTAAGGAGGAATCAATCTGTTAGCGATTTTAGGGGGGGTAATACTGGTGGTGGTGGTGGTGGTGGTGGCCATGCAATGGGA GGGCCTGTGAGGTCGAGATCCACGGAGGATATCTATACGAGGTCGCAATTGGAGGCTTCTGCGGCGAATAAGGAAAGCTTTTTTGCTAGGAGAATGGCAG ATAATGAGTCGAGATCTGACGCTGTCCCCCCTTCACAAGGTGGGAAGTATGTGGGATTTGGATCTAGTCCTGCACCTACGCAAAGGAATAATAATTCGCA ACAGGATGTTCTCTCTGCTGTGTCACAGGGATTTGGTAAGTTATCTATGGTGGCTGCATCTGCGGCCCAGTCAGCTGCAAATGTTGTCCATGCCGGCACA AAAGAGTTAACTTCCAAGGTAAAGGAAGGTGGCTATGATTACAAGGTGAATGAAACTGTCAATGTCGTTACTGCAAAAACAACGGAAATTGGACAGAGGA CATGGGGGATTATGAAAGGGGTAATGGCAATAGCTTCGCAGAAGGTTGAGGAGTACACTAAAGAAGGCCGGAACACTGACAACTGGCAACAGAGTGATAA TCAGAGTAATGGATATTATCAAGAGTTTAATAAGCAGGAAAATAAAGGATGGAATTCTTCTTCTGGTGGACAGTCCTCAAGTGGTCATCATAATTCCTAT GGCTCAAGTTCTTGGGATGACTGGGACCAGAAAGACAACAGGAAGGAAGATAGCATAAAGTCTACTGCCTCGCATAGCAATGATGATTGGGCAGGTTGGG ATGATGCCAAAGATGATGGATATGATGATAATATCTACCATAGTGCTCCCAGTACAAAATCCGCTAGTCACAACGGAAAGTCAGATGCCTCATGGACAGG GGGAGGCTTTCTTTAG
AA sequence Show only first row Show all	>Potri.006G084000.2 pacid=42768357 polypeptide=Potri.006G084000.2.p locus=Potri.006G084000 ID=Potri.006G084000.2.v4.1 annot-version=v4.1 MAASRRLRELQSQPANKICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMESGGNDKLNAFLAQYGIPKETDIVAKYN TNAASVYRDRIQTLADGRSWRDPPVVKETIGSKKKPPLSQSGSAGGGRDSYSSNNGGWDNWDNDDSLGSSSSDVRRNQSVSDFRGGNTGGGGGGGGHAMG GPVRSRSTEDIYTRSQLEASAANKESFFARRMADNESRSDAVPPSQGGKYVGFGSSPAPTQRNNNSQQDVLSAVSQGFGKLSMVAASAAQSAANVVHAGT KELTSKVKEGGYDYKVNETVNVVTAKTTEIGQRTWGIMKGVMAIASQKVEEYTKEGRNTDNWQQSDNQSNGYYQEFNKQENKGWNSSSGGQSSSGHHNSY GSSSWDDWDQKDNRKEDSIKSTASHSNDDWAGWDDAKDDGYDDNIYHSAPSTKSASHNGKSDASWTGGGFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G53710		AGD6	ARF-GAP domain 6 (.1.2)		Potri.006G084000 [exp]	0	1	ASP1.2
AT3G16760			Tetratricopeptide repeat (TPR)...		Potri.010G007000 [exp]	6.16	0.8748
AT5G54430		ATPHOS32	Adenine nucleotide alpha hydro...		Potri.011G125500 [exp]	6.32	0.8664
AT4G10840			Tetratricopeptide repeat (TPR)...		Potri.001G087800 [exp]	10.39	0.8738
AT2G41770			Protein of unknown function (D...		Potri.006G051000 [exp]	12.00	0.8714
AT3G16630		ATKINESIN-13A, ...	P-loop containing nucleoside t...		Potri.010G013500 [exp]	14.21	0.8772
AT2G20760			Clathrin light chain protein (...		Potri.004G040100 [exp]	18.00	0.8658
AT4G01400			unknown protein		Potri.002G179600 [exp]	26.26	0.8675
AT4G22320			unknown protein		Potri.011G023200 [exp]	32.86	0.8290
AT4G17890		UBP20, AGD8	ARF-GAP domain 8 (.1.2)		Potri.001G142100 [exp]	37.54	0.8712	UBP20.2
AT4G17890		UBP20, AGD8	ARF-GAP domain 8 (.1.2)		Potri.003G092300 [exp]	39.71	0.8442	UBP20.1

Compare expression of checked genes

Potri.006G084000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.