Plant FIBer expression Database

Potri.006G084400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G02440 78 / 5e-18 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G238900
[exp]
161 / 9e-50 AT5G02440 81 / 4e-19 unknown protein
Potri.009G030100
[exp]
158 / 1e-48 AT5G02440 98 / 1e-25 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024400
[exp]
145 / 2e-43 AT5G02440 88 / 1e-21 unknown protein
Lus10025345
[exp]
132 / 1e-38 AT5G02440 67 / 6e-14 unknown protein
Lus10023770
[exp]
130 / 8e-38 AT5G02440 97 / 2e-25 unknown protein
Lus10016560
[exp]
69 / 4e-14 AT5G02440 66 / 2e-13 unknown protein
Lus10040828
[exp]
66 / 4e-13 AT5G02440 66 / 1e-13 unknown protein
Lus10000246
[exp]
48 / 2e-07 AT5G02440 47 / 1e-07 unknown protein
PFAM info
Representative CDS sequence
>Potri.006G084400.2 pacid=42768598 polypeptide=Potri.006G084400.2.p locus=Potri.006G084400 ID=Potri.006G084400.2.v4.1 annot-version=v4.1
ATGGTCATGGAGGCTCAACAACAGGAAGATGGGTGGCCACTCGGCCTAAGACCGCTGAATGCAAGAGTTGGGTTGGTGAGAAATCGAGATTTCAATGGTT
CAATTTCTTTTAGCACTTTGCTCACTGCTTCTAACAGCTCCTTCACTGACTCCTCTTCAGATCTTGATACTGAGTCCACTGGATCTTTCTTCCATGACAA
GAGCTTAACACTAGGGAGTCTCATTGGAGTTTCTAGCATTCTAGAGCTCTCTAGAAGATCAACTAGGGGAAGGACCACTGAAACCTTACGAGAGCAGAAG
AATTACAAATCAAAACCATGGATGTTCTCAATATGCTCGAGGCTAAGCCCTGATGTCGTCAACACAAACAACAATGCTCCTTCTCTTGGCCACTTTCTTG
AAGTAGAGAGGAGAGCTGCTGCCAACATTCACAGAAGGAATATGATATATGGACCTAGAAATTTCTCCCCAATTCTGCCTAACTCCGGTGTAAATTCTCA
ATTTTTGGGTGATCAGATTGCCCCGCAATCAAGTGCTTCATTGGGAGTAGATGGAGGGAGAAGATCCAACACAGAATTGTTACAACATGGTACTGGGTAT
GGAGCTTCATTAGTACTGTCATGTTTGTGTGGACAACTCATTGAATGA
AA sequence
>Potri.006G084400.2 pacid=42768598 polypeptide=Potri.006G084400.2.p locus=Potri.006G084400 ID=Potri.006G084400.2.v4.1 annot-version=v4.1
MVMEAQQQEDGWPLGLRPLNARVGLVRNRDFNGSISFSTLLTASNSSFTDSSSDLDTESTGSFFHDKSLTLGSLIGVSSILELSRRSTRGRTTETLREQK
NYKSKPWMFSICSRLSPDVVNTNNNAPSLGHFLEVERRAAANIHRRNMIYGPRNFSPILPNSGVNSQFLGDQIAPQSSASLGVDGGRRSNTELLQHGTGY
GASLVLSCLCGQLIE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G02440 unknown protein Potri.006G084400
[exp]
0 1
AT5G09450 Tetratricopeptide repeat (TPR)... Potri.017G048500
[exp]
8.77 0.7472
AT1G78172 unknown protein Potri.002G096200
[exp]
10.77 0.7710
AT5G45280 Pectinacetylesterase family pr... Potri.003G046200
[exp]
13.11 0.7653
AT1G08880 HTA5 ,G-H2AX ,G... histone H2A 5, gamma histone v... Potri.005G040700
[exp]
13.41 0.7696
AT3G03680 C2 calcium/lipid-binding plant... Potri.013G066400
[exp]
13.78 0.7616
AT5G59970 Histone superfamily protein (.... Potri.010G213900
[exp]
14.28 0.6942 HFO913
AT3G18800 unknown protein Potri.001G309000
[exp]
16.91 0.7377
AT2G39050 ArathEULS3 Euonymus lectin S3, hydroxypro... Potri.013G054100
[exp]
18.76 0.6883
AT3G22960 PKP-ALPHA, PKP1 PLASTIDIAL PYRUVATE KINASE 1, ... Potri.009G084700
[exp]
20.73 0.7380
AT4G36360 BGAL3 beta-galactosidase 3 (.1.2) Potri.005G232600
[exp]
21.90 0.7116 GAL1.7

Potri.006G084400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.