Gene [POPLAR] | FIBexDB

External link

JGI Phytozome v13

[genome browser]

Popgenie

AspWood

Symbol

Arabidopsis homologues

Show only best Show top 10

Locus ID	BLAST score/e-value	Alias	TAIR10 short description
AT2G37670	920 / 0		Transducin/WD40 repeat-like superfamily protein (.1)
AT5G02430	837 / 0		Transducin/WD40 repeat-like superfamily protein (.1)
AT3G15470	495 / 3e-161		Transducin/WD40 repeat-like superfamily protein (.1)
AT5G54200	488 / 5e-159		Transducin/WD40 repeat-like superfamily protein (.1)
AT5G53500	298 / 2e-89		Transducin/WD40 repeat-like superfamily protein (.1)
AT5G24320	295 / 7e-88		Transducin/WD40 repeat-like superfamily protein (.1.2)
AT5G42010	270 / 2e-78		Transducin/WD40 repeat-like superfamily protein (.1)
AT1G64610	263 / 2e-76		Transducin/WD40 repeat-like superfamily protein (.1.2)
AT1G48870	230 / 4e-65		Transducin/WD40 repeat-like superfamily protein (.1)
AT3G49660	95 / 5e-21	AtWDR5a	human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)

Paralogs

Show only best Show top 10

Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.011G122500 [exp]	532 / 7e-175	AT3G15470	835 / 0.0	Transducin/WD40 repeat-like superfamily protein (.1)
Potri.001G403400 [exp]	498 / 3e-161	AT3G15470	828 / 0.0	Transducin/WD40 repeat-like superfamily protein (.1)
Potri.002G174100 [exp]	369 / 1e-114	AT5G53500	523 / 1e-177	Transducin/WD40 repeat-like superfamily protein (.1)
Potri.003G144400 [exp]	330 / 3e-100	AT5G24320	516 / 4e-174	Transducin/WD40 repeat-like superfamily protein (.1.2)
Potri.001G086600 [exp]	320 / 3e-96	AT5G24320	514 / 1e-173	Transducin/WD40 repeat-like superfamily protein (.1.2)
Potri.015G009700 [exp]	302 / 4e-90	AT5G24320	621 / 0.0	Transducin/WD40 repeat-like superfamily protein (.1.2)
Potri.012G018200 [exp]	291 / 6e-86	AT5G24320	606 / 0.0	Transducin/WD40 repeat-like superfamily protein (.1.2)
Potri.005G057600 [exp]	282 / 2e-83	AT5G24320	384 / 3e-124	Transducin/WD40 repeat-like superfamily protein (.1.2)
Potri.007G110500 [exp]	282 / 3e-83	AT5G24320	411 / 1e-134	Transducin/WD40 repeat-like superfamily protein (.1.2)

Flax homologues

Show only best Show top 10

Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10024399 [exp]	956 / 0	AT2G37670	850 / 0.0	Transducin/WD40 repeat-like superfamily protein (.1)
Lus10003974 [exp]	832 / 0	AT2G37670	837 / 0.0	Transducin/WD40 repeat-like superfamily protein (.1)
Lus10023797 [exp]	491 / 3e-160	AT5G02430	423 / 7e-135	Transducin/WD40 repeat-like superfamily protein (.1)
Lus10027671 [exp]	407 / 2e-129	AT5G54200	691 / 0.0	Transducin/WD40 repeat-like superfamily protein (.1)
Lus10039934 [exp]	405 / 9e-129	AT5G54200	691 / 0.0	Transducin/WD40 repeat-like superfamily protein (.1)
Lus10032436 [exp]	327 / 4e-99	AT5G24320	516 / 1e-174	Transducin/WD40 repeat-like superfamily protein (.1.2)
Lus10023033 [exp]	320 / 2e-96	AT5G24320	508 / 3e-171	Transducin/WD40 repeat-like superfamily protein (.1.2)
Lus10017312 [exp]	313 / 2e-94	AT1G64610	439 / 4e-146	Transducin/WD40 repeat-like superfamily protein (.1.2)
Lus10003206 [exp]	298 / 5e-89	AT1G64610	427 / 1e-141	Transducin/WD40 repeat-like superfamily protein (.1.2)
Lus10020846 [exp]	273 / 2e-80	AT1G48870	407 / 3e-135	Transducin/WD40 repeat-like superfamily protein (.1)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
CL0186 [poplar] [flax]	Beta_propeller	PF00400 [poplar] [flax]	WD40	WD domain, G-beta repeat

Representative CDS sequence

Show only first row Show all

>Potri.006G084600.1 pacid=42766955 polypeptide=Potri.006G084600.1.p locus=Potri.006G084600 ID=Potri.006G084600.1.v4.1 annot-version=v4.1

ATGGAGCGAAAGAGAACGCTTACCATGAACTGGGATGCCCTGGGCGATCATGATCATGATGACGAAGACCGTTTCTTTGAAACCTACGACCGCCTCTCCT

CCGTTGTTCCTATCGACTTGAATTCTTCTGGTTCCGATGAAGACGATGACTTTGATGACACTCGTATGTCATTTGCCTCCGCCATTTCTTCCCTCTCCAC

TTCTGAATTCCGGAACTATGCAGCTGCCGCTGCTACCTTGTCCCCCAAGTACTCTGCTTCCGTGTCCCCAGATTATGATATCTGGATGGCAGCCCCTGGA

TCCATTACAGAACGTCGGAAGCGTCTCCTTCAAGGCATGGGTTTGAATAGCAATAAAGAGCTTCTTAAAATGGCAAGTAAAGGCTTGATGCGTGATGTTA

CCAATAAAAATATTGTTGTCATCGACGGTGACAATTCTACTATTGATCATGATCACATTGGAGACTCCAAACAGGAGGCTTCCCCCTCACTACCGCTACC

GGCCGTTCTACTTGTGCGTTCAAGGTCTGACGGTGATATAGAATCATTTTCTGTTGACAGGAAAAGAAAAGAAGAATTACTTGGGTTGATCTCAAAGCAA

CGACTTACAAGAACGTCGTCAATGATAATTGTGTCTCATGGTCGAATATTTCCATCTCAGGATTCAAACAGACTCTCACCCAAGGATGCACGAAGAGAAC

GCCCAGTTGCCCACAGCAGTGCACTAACTTCAATAATATCAAATAGCCGGTTTGGGGCGTTTTTCTTGATAAAGAATTTGGATACTGGAAAAGAATTTAT

TGTTAACGAGTATGATCAGGATGGGATGTGGAATAGGCTCAGTGATCTACAAACAGGAAAGCAATTGACGATGGAGGAATTCGAAAAGTGCGTTGGCCAT

TCACCGGTTGTCAAGGAGCTGATGCGGAGAGAAAATGTTTCTAGATTGAACGTTACTGATGAGGGAAATGATCGCAAAATTAGTGCTAATTCATACCTTT

CTAAAAGTTTGAGAATGAGCAAGAGAAGGGGGGCGGCTCTTTTGAAAAACATAAAAGGGGTGGCTTATTCTATGTCTATGAGCGGATCGTCAAGAATTCA

GGATCCAAAACAGGAGCCAAAATTGAGCAAAAACTCTGCCTCATCTGGATGGATAAAGGTTAGGCAGACAGGGAAATCGTACAAGGAGCTAAGTGCTTTG

CATCTGTGTCAAGAGATTCAGGCTCACCAAGGATCAATTTGGACTATTAGGTTCAGTTCAGATGCTCGATTTCTTGCAAGTGGGGGTGAAGATAGGATTA

TTCATATTTGGGAAGTGCAAGAATGTGAAGTTATGTCATTGCATGATGGAAATCTTACCCCACTTCATCCATCATTATGTAGCTCAACTCCAAGCCTAGG

AGAGGTCACACCAATGTCATCGGAGAGGAAGAAAAAGTGGAAGGCTTCCTCTAGCAGGAAAGGCAATCCAATTCCGGAGTACGTCCATGTGCCAGAAACT

GTGTTTTCTCTATCCGAGAAACCAGTCTGCTCTTTCACAGGTCATCTTGATGATGTCTTGGACTTGTCCTGGTCCAGATCTCAGCTGCTGCTGTCATCCT

CAATGGACAAAACTGTTAGGTTATGGGACATGGAAACGAAGAGCTGTCTAAAGTTGTTTGCTCATAATGATTATGTGACTTGCATCCAGTTCAATCCAAT

GGATGAGAGATATTTCATAAGTGGCTCCCTTGATGCAAAAGTTCGAATCTGGAGCATACCTGATCGACAACTGGTGGACTGGACAGATCTTCATGAAATG

GTCACTGCTGTTTGCTACACTCCTGATGGCCAGGGTGCCTTGGTCGGTTCACATAAAGGAAGTTGTCGGATGTATAACGCGGAGGATTGCAAGTTGAGCC

AAATGGAATGTGTGGATGTTCAGAACAAGAAGCGGTCTCAAGCAAAGAAAATAACTGGTTTCCAGTTTTCCCCAGGGAATCCATCTGAAGTGCTCGTTAC

TTCTGCTGATTCCCGTGTACGAATTTTGGATGGTTCAGAAGTTGTTCATAAATTCAGAGGTTTTAGAAATATCAACAGCCAAATTTCAGCTTCATTTAGT

TCAGATGGAAAATACGTGGTAAGTGCCAGTGAAGATTCTCATGTATACATTTGGAAGCGAGAAGAGCCTCGGCCTCGAGGAGGTACTGGAAAAGGCAAGA

GTGTGATCAATACTCGATCTCATGAAAGCTTCCAGTGCAGAGATGTGTCAGTAGCCATCCCATGGAATGGTACAGTAAAGGGTGATCCCCCACCATTGCA

GTTGCATTCTAAAAGGCAATCAAAACGATCTTCCGCCCCCTCACAACCACCATCGGCCAGCACTTCTCCCACTAAAGAAGACGCAGCTGTAAACAGTAAG

AGACATTTCCCACCTTCAGCTAATGAGTCGCCCACTAGAGAAGAGAACTCTCCAGTTAAGAACAGCAAGAGACAACTGCCACCTCTTCCAAGGAAAAACA

GCATAGATACATCTCATACTCCTCCTGAAGAATATCTGTCTCTAATTTCTCATTCGGATTCTGGACTTGGAGAGTTATTTGCTTCAAGCTCTTCTTCAAT

AAGATACGGTGATTCACCTTCTATTTCTGCTGCTCCTACTCCATCTTCCTCTTGGTCTTCCTCTTGGTTATGGCTCGATGGAGGTAGCCATGGGAACCAA

ACTGTCCAAGCAACAGCATGGGGCTTGGTGATTGTGACAGCTACATTAGGAGGCGAAATCAGGACTTATCAAAATTTTGGGTTGCCTCGAAAGATTGGCC

GCCAAGCGCACCTATTTTGA

AA sequence

Show only first row Show all

>Potri.006G084600.1 pacid=42766955 polypeptide=Potri.006G084600.1.p locus=Potri.006G084600 ID=Potri.006G084600.1.v4.1 annot-version=v4.1

MERKRTLTMNWDALGDHDHDDEDRFFETYDRLSSVVPIDLNSSGSDEDDDFDDTRMSFASAISSLSTSEFRNYAAAAATLSPKYSASVSPDYDIWMAAPG

SITERRKRLLQGMGLNSNKELLKMASKGLMRDVTNKNIVVIDGDNSTIDHDHIGDSKQEASPSLPLPAVLLVRSRSDGDIESFSVDRKRKEELLGLISKQ

RLTRTSSMIIVSHGRIFPSQDSNRLSPKDARRERPVAHSSALTSIISNSRFGAFFLIKNLDTGKEFIVNEYDQDGMWNRLSDLQTGKQLTMEEFEKCVGH

SPVVKELMRRENVSRLNVTDEGNDRKISANSYLSKSLRMSKRRGAALLKNIKGVAYSMSMSGSSRIQDPKQEPKLSKNSASSGWIKVRQTGKSYKELSAL

HLCQEIQAHQGSIWTIRFSSDARFLASGGEDRIIHIWEVQECEVMSLHDGNLTPLHPSLCSSTPSLGEVTPMSSERKKKWKASSSRKGNPIPEYVHVPET

VFSLSEKPVCSFTGHLDDVLDLSWSRSQLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDERYFISGSLDAKVRIWSIPDRQLVDWTDLHEM

VTAVCYTPDGQGALVGSHKGSCRMYNAEDCKLSQMECVDVQNKKRSQAKKITGFQFSPGNPSEVLVTSADSRVRILDGSEVVHKFRGFRNINSQISASFS

SDGKYVVSASEDSHVYIWKREEPRPRGGTGKGKSVINTRSHESFQCRDVSVAIPWNGTVKGDPPPLQLHSKRQSKRSSAPSQPPSASTSPTKEDAAVNSK

RHFPPSANESPTREENSPVKNSKRQLPPLPRKNSIDTSHTPPEEYLSLISHSDSGLGELFASSSSSIRYGDSPSISAAPTPSSSWSSSWLWLDGGSHGNQ

TVQATAWGLVIVTATLGGEIRTYQNFGLPRKIGRQAHLF

DESeq2's median of ratios [POPLAR]

Coexpressed genes

Download tab-delimited text

Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37670			Transducin/WD40 repeat-like su...		Potri.006G084600 [exp]	0	1
AT5G28780			PIF1 helicase (.1)		Potri.009G007400 [exp]	47.14	0.4795

Potri.006G084600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Potri.006G084600 [POPLAR]

DESeq2's median of ratios [POPLAR]

Coexpressed genes

Potri.006G084600 coexpression network