Plant FIBer expression Database

Potri.006G084700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G02420 57 / 1e-10 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G030200
[exp]
81 / 3e-19 AT5G02420 49 / 5e-08 unknown protein
Potri.001G239000
[exp]
81 / 4e-19 AT5G02420 59 / 1e-11 unknown protein
Potri.009G003400
[exp]
41 / 6e-05 AT5G02420 45 / 7e-07 unknown protein
Potri.001G212300
[exp]
39 / 0.0006 AT5G02420 43 / 8e-06 unknown protein
Potri.008G029600
[exp]
38 / 0.0008 AT5G02420 48 / 5e-08 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016559
[exp]
45 / 5e-06 AT2G37610 39 / 2e-04 unknown protein
Lus10040827
[exp]
42 / 8e-05 AT3G20898 44 / 8e-06 unknown protein
Lus10038653
[exp]
40 / 0.0002 AT5G02420 47 / 2e-07 unknown protein
Lus10037925
[exp]
39 / 0.0007 AT5G02420 47 / 2e-07 unknown protein
PFAM info
Representative CDS sequence
>Potri.006G084700.1 pacid=42769267 polypeptide=Potri.006G084700.1.p locus=Potri.006G084700 ID=Potri.006G084700.1.v4.1 annot-version=v4.1
ATGGTAGCTTATCCTCGTGTTCTCGAATTTGTTGTAAAAACCTCCTTCTCGATAAGTATGTCAAGTTCAGAGCTGTTTATTGTCAAAGAAAACAATGAAG
AGAAAGAACTCAACTTCTTGAGTAAGAGACCCATGTTAGAATTTCAAAAAGAAAGTCATGCAACGACCTCACGAGATTCTGATCCTCCTCAACAGCTTCA
AGAGCAAGAAGCCAAAAGCGAAGTACATCATGAGAGCCAAGAAGAATGCAACAATACTTTAGATCCCAACTCTATTGAAAAGCCGTCTTTAGAAGCAGTT
CTGATGGAAACATATGTTGTTGGCGACGATGACGACGGATTCAAAACTCCAACATCTTTGGATCACAAGATTTCAATCACGAAATGCCCACCTGCACCGA
GAAAACCCAACTCGTTCCTATCAAGGAAAAGAAAAGCATCGCCACCGAAGGCACGTACAATTCTACAGCTTGATCTATCACAAGAAATTGAGGCAGTATT
TCCTAGTACCATTGTTGTTGATTTGCAAAAAAAGATCAAGAAATCTCCAAGTGACAACGACATAACCGGTGAATTTATACCTTCTCCAACTTGA
AA sequence
>Potri.006G084700.1 pacid=42769267 polypeptide=Potri.006G084700.1.p locus=Potri.006G084700 ID=Potri.006G084700.1.v4.1 annot-version=v4.1
MVAYPRVLEFVVKTSFSISMSSSELFIVKENNEEKELNFLSKRPMLEFQKESHATTSRDSDPPQQLQEQEAKSEVHHESQEECNNTLDPNSIEKPSLEAV
LMETYVVGDDDDGFKTPTSLDHKISITKCPPAPRKPNSFLSRKRKASPPKARTILQLDLSQEIEAVFPSTIVVDLQKKIKKSPSDNDITGEFIPSPT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G02420 unknown protein Potri.006G084700
[exp]
0 1
AT5G63380 AMP-dependent synthetase and l... Potri.012G095000
[exp]
4.24 0.8300
AT5G14420 RGLG2 RING domain ligase2 (.1.2.3.4) Potri.008G183600
[exp]
4.69 0.8202
AT5G18270 NAC ANAC087 Arabidopsis NAC domain contain... Potri.019G031600
[exp]
9.48 0.7928
AT2G16050 Cysteine/Histidine-rich C1 dom... Potri.010G205100
[exp]
10.00 0.7466
AT2G26640 KCS11 3-ketoacyl-CoA synthase 11 (.1... Potri.010G080400
[exp]
17.32 0.7560
AT5G06510 CCAAT NF-YA10 "nuclear factor Y, subunit A10... Potri.006G201900
[exp]
17.74 0.7974
AT1G22540 Major facilitator superfamily ... Potri.019G079700
[exp]
19.74 0.7347
AT5G65210 bZIP TGA1 bZIP transcription factor fami... Potri.007G085700
[exp]
25.90 0.7637 Pt-STGA1.4
AT1G67710 GARP ARR11 response regulator 11 (.1) Potri.010G053100
[exp]
26.83 0.7580
AT4G25850 ORP4B OSBP(oxysterol binding protein... Potri.018G143600
[exp]
28.37 0.7714

Potri.006G084700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.