Plant FIBer expression Database

Potri.006G084800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G02410 558 / 0 ALG10 homolog of yeast ALG10, DIE2/ALG10 family (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023796
[exp]
633 / 0 AT5G02410 600 / 0.0 homolog of yeast ALG10, DIE2/ALG10 family (.1)
Lus10003973
[exp]
627 / 0 AT5G02410 599 / 0.0 homolog of yeast ALG10, DIE2/ALG10 family (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0111 GT-C PF04922 DIE2_ALG10 DIE2/ALG10 family
Representative CDS sequence
>Potri.006G084800.1 pacid=42769737 polypeptide=Potri.006G084800.1.p locus=Potri.006G084800 ID=Potri.006G084800.1.v4.1 annot-version=v4.1
ATGGGTAGAATAGCAGTCGCATTGATAGTGAGCTCTTGGGTTATTCCCATATCAATCCTCGTCAATCGAATTGTACCTGAACCATACATGGACGAGATTT
TCCATATTCCTCAGGCTCAACAATATTGCAAAGGCAATTTTGCAAGTTGGGATCCCATGATCACTACTCCACCTGGCCTGTACTATCTTTCACTTGCCCA
TGTTGCTTCTTTGTTTCCAGGCATGTTTTTCATACGTGGGGTGTCATTGTTCTCTGAATTGTGCTCCACACCAATTCTTCGCTCTGTGAATGGTGTATTG
GCAATATTATGTAGTGTTATTGTATACGAGATCATCACCCTCTTGAGACCAAATATTGATGAAAGAAAAGCAACAATTTTTGCGGTGGTTCTGGCGCTGT
ACCCGCTCCACTGGTTCTTCACGTTCCTTTATTATACAGATGTTGCATCACTTACTACAGTTCTTGCTATGTATCTTGCATGCTTGAAGAAGAAATACCA
CTTAAGTGCATTGCTTGGAGCCTATGCAGTTTTCATCCGACAGACGAATATTGTCTGGATGCTTTTTGTTGCATGCACTGGGGTCATGGATATTACTCTG
ACCCATCAAAGAGAGAGTGTGAAAGTAGACAACTTAAATACCACGGGCAACAAAACTGGCCATTCAGTCCCAAACAATCACATCATAGTTGGCTCAAACA
TGAGAAGACGAAAGCCCAATAGTGCTGTGGATAACAGCAAAAGTTCTATGACGAGTACACTCACCTATTCAACAAGCCATTCATCAGGTTTTCTTGATGA
GATTAAGGCAATCTGTTTGACATCATGGAATATGAAGTCAAAACTTTTATTCTCCTTTAGCCCCTTCTTTATAGTATTGGTGGCCTTTGTTGCTTTTGTC
CGTTGGAATGGGAGTGTAGTTCTTGGTGCAAAAGAAGCTCATGCAGTTTCTCCACATTTTGCACAGTTAATGTATTTTAGTCTGGTTTCTTCTCTGGCAT
TGGCTCCCCTGCATTTCTCTTTGGATCAAGCTGTGCATCTGTTTTGGTCATTCTGGAAGAAAAGGCCCCTTGGTTTTTGTCAATGGATAGTGGCTCTTAC
TGCCGGCTTTCTCTCTGTGCATTCTTACAGCATAGCTCATGCCTATCTCCTCGCTGACAATCGGCACTATACCTTTTATCTTTGGCGGAAGGTCATCCAA
TCTCATCAGTCAACGAAGTACCTTCTGGTCCCACTTTATGTCTATTCATGGTTTTCCATCTTCAGAGTATTGGCTAGACCAAAAATTTGGGTATTGGCAT
ATTTCTTGGCTACAGCTGCAGTTCTAGTTCCTGCTCCACTTATTGAATTCAGATACTATACCATACCATTCTACTTCTTGATGCTTCACTCCCATACGGT
TGACATTCAAAGTTTGGTCCTCATCGGACTTGGATATGTGGTAACCAATGTTTTCACAATGTTTATGTTCTTGTTTAGGCCATTTAATTGGAGCCATGAG
CCTGGGAAACAGAGGTTTATTTGGTAG
AA sequence
>Potri.006G084800.1 pacid=42769737 polypeptide=Potri.006G084800.1.p locus=Potri.006G084800 ID=Potri.006G084800.1.v4.1 annot-version=v4.1
MGRIAVALIVSSWVIPISILVNRIVPEPYMDEIFHIPQAQQYCKGNFASWDPMITTPPGLYYLSLAHVASLFPGMFFIRGVSLFSELCSTPILRSVNGVL
AILCSVIVYEIITLLRPNIDERKATIFAVVLALYPLHWFFTFLYYTDVASLTTVLAMYLACLKKKYHLSALLGAYAVFIRQTNIVWMLFVACTGVMDITL
THQRESVKVDNLNTTGNKTGHSVPNNHIIVGSNMRRRKPNSAVDNSKSSMTSTLTYSTSHSSGFLDEIKAICLTSWNMKSKLLFSFSPFFIVLVAFVAFV
RWNGSVVLGAKEAHAVSPHFAQLMYFSLVSSLALAPLHFSLDQAVHLFWSFWKKRPLGFCQWIVALTAGFLSVHSYSIAHAYLLADNRHYTFYLWRKVIQ
SHQSTKYLLVPLYVYSWFSIFRVLARPKIWVLAYFLATAAVLVPAPLIEFRYYTIPFYFLMLHSHTVDIQSLVLIGLGYVVTNVFTMFMFLFRPFNWSHE
PGKQRFIW

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G02410 ALG10 homolog of yeast ALG10, DIE2/A... Potri.006G084800
[exp]
0 1
AT5G58100 unknown protein Potri.018G150600
[exp]
2.82 0.7574
AT2G14170 ALDH6B2 aldehyde dehydrogenase 6B2 (.... Potri.009G078700
[exp]
5.47 0.7479
AT5G22350 ELM1 ELONGATED MITOCHONDRIA 1, Prot... Potri.016G075500
[exp]
7.07 0.7300
AT3G10380 SEC8, ATSEC8 subunit of exocyst complex 8 (... Potri.008G035300
[exp]
17.32 0.7165
AT2G23093 Major facilitator superfamily ... Potri.007G052700
[exp]
21.35 0.7012
AT5G20280 SPSA1, ATSPS1F sucrose-phosphate synthase A1,... Potri.006G064300
[exp]
22.58 0.6728 Pt-SPS.1
AT1G71820 SEC6 SEC6 (.1.2) Potri.019G088100
[exp]
23.10 0.7478
AT4G16460 unknown protein Potri.006G016100
[exp]
24.49 0.6676
AT1G02145 EBS4, ALG12 EMS-MUTAGENIZED BRI1\(BRASSINO... Potri.002G139200
[exp]
26.07 0.7308
AT3G60830 ATARP7 actin-related protein 7 (.1) Potri.001G265200
[exp]
28.53 0.6190 ARP7.1,ARP903

Potri.006G084800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.