Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07630 661 / 0 PLL5 pol-like 5 (.1) AT2G28890 652 / 0 PLL4 poltergeist like 4 (.1) AT5G02400 577 / 0 PLL2 pol-like 2 (.1) AT3G09400 545 / 0 PLL3 pol-like 3 (.1.2) AT2G46920 332 / 2e-102 POL poltergeist, Protein phosphatase 2C family protein (.1.2) AT2G35350 320 / 3e-98 PLL1 poltergeist like 1 (.1) AT3G16560 253 / 4e-76 Protein phosphatase 2C family protein (.1) AT3G12620 130 / 1e-32 Protein phosphatase 2C family protein (.1.2) AT3G51370 127 / 2e-32 Protein phosphatase 2C family protein (.1.2) AT3G17090 125 / 6e-31 Protein phosphatase 2C family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G030600 [exp] 675 / 0 AT1G07630 884 / 0.0 pol-like 5 (.1) Potri.001G239300 [exp] 664 / 0 AT2G28890 862 / 0.0 poltergeist like 4 (.1) Potri.001G144700 [exp] 347 / 8e-109 AT2G35350 768 / 0.0 poltergeist like 1 (.1) Potri.003G089500 [exp] 346 / 2e-108 AT2G35350 764 / 0.0 poltergeist like 1 (.1) Potri.014G110500 [exp] 331 / 2e-101 AT2G46920 1092 / 0.0 poltergeist, Protein phosphatase 2C family protein (.1.2) Potri.002G185000 [exp] 329 / 1e-100 AT2G46920 1092 / 0.0 poltergeist, Protein phosphatase 2C family protein (.1.2) Potri.003G159600 [exp] 267 / 5e-81 AT3G16560 476 / 7e-165 Protein phosphatase 2C family protein (.1) Potri.008G207700 [exp] 254 / 4e-76 AT3G16560 530 / 0.0 Protein phosphatase 2C family protein (.1) Potri.010G024800 [exp] 245 / 8e-73 AT3G16560 502 / 5e-175 Protein phosphatase 2C family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024397 [exp] 679 / 0 AT1G07630 674 / 0.0 pol-like 5 (.1) Lus10025348 [exp] 677 / 0 AT1G07630 682 / 0.0 pol-like 5 (.1) Lus10040823 [exp] 640 / 0 AT1G07630 869 / 0.0 pol-like 5 (.1) Lus10016555 [exp] 638 / 0 AT1G07630 868 / 0.0 pol-like 5 (.1) Lus10000896 [exp] 337 / 2e-105 AT2G35350 516 / 3e-173 poltergeist like 1 (.1) Lus10004554 [exp] 339 / 4e-105 AT2G35350 512 / 3e-170 poltergeist like 1 (.1) Lus10004793 [exp] 260 / 1e-78 AT3G16560 613 / 0.0 Protein phosphatase 2C family protein (.1) Lus10008378 [exp] 258 / 8e-78 AT3G16560 615 / 0.0 Protein phosphatase 2C family protein (.1) Lus10015047 [exp] 138 / 3e-35 AT3G55050 476 / 7e-169 Protein phosphatase 2C family protein (.1.2) Lus10003993 [exp] 132 / 2e-33 AT3G12620 483 / 1e-171 Protein phosphatase 2C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [poplar] [flax] PP2C PF00481 [poplar] [flax] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Potri.006G085000.1 pacid=42768573 polypeptide=Potri.006G085000.1.p locus=Potri.006G085000 ID=Potri.006G085000.1.v4.1 annot-version=v4.1 ATGGGCAACTGTGTCACAAAAGTGAGTCACTGTTTTGCCAGGGCAGGGGACATCTCAGCCCGGCACCATAATATCTCCATTGATAATTATGGCCGGGAGG GACTAGGTCACTCCTTCTGTTACATCCGACCACACATTCACCCAGCTTCCAGACTCTGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAACAAAATCCA CTCTGAGCTGGAAAAAACAACGTTTCGGTCCATCTCCGGAGCCTCTCTAAGCGCCAACACATCAACAACATCCTCAACCTCTCTTAATGATACTCTCTGC TCCAACAGCTCTGGTTTGGATCGAGCATCCACTTTTGAAAGCTCTGATTCTTTCGCTTCCCTCCCTCTTCAGCCTGTCCCTCGTGGCTCCGGTGTCCTCT CATCATCAGGTTATTCAGGTCCTATAGAACGTGGCTTTTTATCAGGTCCTATCGAGCGTGGATTTCTATCAGGTCCCATTGATCCTGCTAGTTTCTATTC AGGTCCGTTTGATAAAGAAAAAGACAAGGACATCAGTACTGTTAATTATAGTACCACTAATCAGTTGCAGAGTAGTAGTTTGTCTCATGCTGCCCTTATT ACTAGTATTGATGAAGTTGAAGTTAAACCCAAGAAACAACAGGCCGGTTTAATAAAGACTTTAAAAAGAGCAATATCTAATACTATCTCACGAGGCCAAA AGCTTACGGTGGCACCCATAAGAGTTAAAGAATCAACAAGTACTAGATATGTCAAAGTGATTAATCAAGTTGTTGTTGTTGATGATGATACTGGTCATGA GGATTTGGCGAGTGAGTTCTCAATTGGGAGCCAGAATCTACAATGGGCACAAGGGAAAGCTGGTGAGGATAGAGTACATGTAGTGATATCAGAAGAACAT GGGTGGATTTTTGTGGGGATATATGATGGTTTTAATGGACCTGATGCCCCTGATTATTTGCTTTCTTATCTTTATACCAACATCCATAAGGAGCTTAAAG AGTTGCTGTGGAATAATAATGACAACGTTGAATCCACAGCAACAAAAGCAGAGGGCGTTTTGCATTTAATTGATCAAGAAAATTCTCCGTTGGGAGGAAA TTATTATGATGATCTGAAGAGAAAGCATGGAAAGAATTTGAAGCGTACAACTAAAGGTGGTGACACGAAGAGATGGGAAGAGAAGTTGAATTTGAAATTG AAAGAGAGAATGAACTGCTACTCTAACGGAGTTAACCATTATGATGTTTTGAGAGCGCTTTCGCAGGCATTGAGGAAGACAGAGGAAGCCTATTTTGAGA GTGCTGATAGAATGGCAACCGACAATCCAGAATTGGCTTTGATGGGTTCTTGTGTTCTGGTGATGCTGATGAAGGGAGAAGATGTTTACTTAATGAATGT TGGCGATAGTCGTGCGGTTCTGGCCCAGAAAGGCATAACCGTTCCTGGATTAAGGAAAGGAATCCAGGATTTGGAGATTATCAATGAGGAAAGCAAGCGT GATAGAATTGAAGATTTCGATGGTGACGAGCTTTGTAGGCTGCGTAACTTGAATTCAATTCAGCTGACTATGGATCACACCACATATGTAGATAAGGAAG TTGAGAGGATCAAGAAGGAACATCCTGAAGATGTTTCTGCAGTAATGAATGACAGGGTGAAAGGTTATTTGAAGGTTACTCGAGCCTTCGGGGTTGGCTT TCTCAAACAGCCAAAGTGGAATGATATACTCTTGGAGATGTTCAGGATTGATTACATCGGAACCTCTCCATACGTTACATGTACTCCATCATTATACCAC CACAGACTGAGTCCGAAGGACAGATTCTTAATATTGTCCTCCGATGGGCTCTATCAATACTTCACCAATCAAGAAGCTGTATTGGAGGTTGGCTCTTTTA TTGCTGCATTTCCCGAGGGAGATCCAGCGCAGCATCTAATCGAAGAAGTTCTGTTTCGCGCAGCCAGGAATGCTGGCATGGACTTCCACGAGTTGCTTGA GATTCCACAAGGAGAGCGTCGCAGGTACCATGACGATGTTTCTGTTATCATTATTTCCTTGGAAGGTAGGATATGGCGTTCGTCTGTGTAA
AA sequence Show only first row Show all	>Potri.006G085000.1 pacid=42768573 polypeptide=Potri.006G085000.1.p locus=Potri.006G085000 ID=Potri.006G085000.1.v4.1 annot-version=v4.1 MGNCVTKVSHCFARAGDISARHHNISIDNYGREGLGHSFCYIRPHIHPASRLCSNSSSSSSSSNKIHSELEKTTFRSISGASLSANTSTTSSTSLNDTLC SNSSGLDRASTFESSDSFASLPLQPVPRGSGVLSSSGYSGPIERGFLSGPIERGFLSGPIDPASFYSGPFDKEKDKDISTVNYSTTNQLQSSSLSHAALI TSIDEVEVKPKKQQAGLIKTLKRAISNTISRGQKLTVAPIRVKESTSTRYVKVINQVVVVDDDTGHEDLASEFSIGSQNLQWAQGKAGEDRVHVVISEEH GWIFVGIYDGFNGPDAPDYLLSYLYTNIHKELKELLWNNNDNVESTATKAEGVLHLIDQENSPLGGNYYDDLKRKHGKNLKRTTKGGDTKRWEEKLNLKL KERMNCYSNGVNHYDVLRALSQALRKTEEAYFESADRMATDNPELALMGSCVLVMLMKGEDVYLMNVGDSRAVLAQKGITVPGLRKGIQDLEIINEESKR DRIEDFDGDELCRLRNLNSIQLTMDHTTYVDKEVERIKKEHPEDVSAVMNDRVKGYLKVTRAFGVGFLKQPKWNDILLEMFRIDYIGTSPYVTCTPSLYH HRLSPKDRFLILSSDGLYQYFTNQEAVLEVGSFIAAFPEGDPAQHLIEEVLFRAARNAGMDFHELLEIPQGERRRYHDDVSVIIISLEGRIWRSSV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07630		PLL5	pol-like 5 (.1)		Potri.006G085000 [exp]	0	1
AT3G13840	GRAS		GRAS family transcription fact...		Potri.003G065400 [exp]	2.00	0.8825
AT2G33770		ATUBC24, UBC24,...	UBIQUITIN-CONJUGATING ENZYME 2...		Potri.011G052600 [exp]	4.89	0.8733
AT5G25900		ATKO1, CYP701A3...	CYTOCHROME P450 701 A3, ARABID...		Potri.002G129700 [exp]	7.34	0.8571	KO,GA3.1
AT4G00340		RLK4	receptor-like protein kinase 4...		Potri.013G086100 [exp]	9.16	0.8790
AT4G23980	ARF	ARF9	auxin response factor 9 (.1.2)		Potri.001G088600 [exp]	9.38	0.8661
AT1G61310			LRR and NB-ARC domains-contain...		Potri.001G427670 [exp]	15.29	0.8626
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Potri.018G029100 [exp]	18.81	0.8339
AT3G23510			Cyclopropane-fatty-acyl-phosph...		Potri.010G067600 [exp]	23.62	0.8771
AT4G20260		ATPCAP1	ARABIDOPSIS THALIANA PLASMA-ME...		Potri.003G157100 [exp]	26.49	0.8267
AT5G04870		AK1, ATCPK1, CP...	calcium dependent protein kina...		Potri.008G014700 [exp]	27.42	0.8210	Pt-CPK2.2

Compare expression of checked genes

Potri.006G085000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.