Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02370 659 / 0 ATP binding microtubule motor family protein (.1) AT5G23910 205 / 6e-57 ATP binding microtubule motor family protein (.1) AT3G49650 204 / 5e-56 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G60930 191 / 4e-51 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G50240 188 / 3e-50 KICP-02 ATP binding microtubule motor family protein (.1) AT5G47820 186 / 2e-49 FRA1 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G18550 179 / 9e-48 ATP binding microtubule motor family protein (.1) AT2G28620 180 / 2e-47 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G37420 177 / 2e-46 ATP binding microtubule motor family protein (.1) AT4G39050 173 / 4e-45 Kinesin motor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G146000 [exp] 225 / 6e-64 AT5G23910 439 / 2e-144 ATP binding microtubule motor family protein (.1) Potri.007G046700 [exp] 191 / 5e-51 AT5G47820 1422 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.014G024700 [exp] 185 / 4e-49 AT5G47820 1580 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G123500 [exp] 183 / 2e-48 AT5G47820 1639 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.005G150800 [exp] 180 / 2e-47 AT5G60930 1386 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.012G058400 [exp] 177 / 1e-46 AT1G18550 872 / 0.0 ATP binding microtubule motor family protein (.1) Potri.006G082900 [exp] 177 / 2e-46 AT2G37420 1219 / 0.0 ATP binding microtubule motor family protein (.1) Potri.011G146700 [exp] 174 / 2e-45 AT5G65930 1864 / 0.0 POTATO KINESIN-LIKE CALMODULIN-BINDING PROTEIN, kinesin-like calmodulin-binding protein (ZWICHEL) (.1), kinesin-like calmodulin-binding protein (ZWICHEL) (.2), kinesin-like calmodulin-binding protein (ZWICHEL) (.3) Potri.005G038900 [exp] 168 / 2e-45 AT3G63480 533 / 0.0 ATP binding microtubule motor family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024395 [exp] 655 / 0 AT5G02370 593 / 0.0 ATP binding microtubule motor family protein (.1) Lus10025349 [exp] 639 / 0 AT5G02370 536 / 0.0 ATP binding microtubule motor family protein (.1) Lus10039243 [exp] 233 / 2e-66 AT5G23910 396 / 3e-127 ATP binding microtubule motor family protein (.1) Lus10027488 [exp] 228 / 2e-64 AT5G23910 327 / 9e-101 ATP binding microtubule motor family protein (.1) Lus10019245 [exp] 196 / 1e-53 AT3G49650 816 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10011579 [exp] 196 / 7e-53 AT3G49650 950 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000392 [exp] 195 / 3e-52 AT5G60930 1483 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000762 [exp] 190 / 2e-50 AT5G60930 1498 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10010047 [exp] 189 / 2e-50 AT5G47820 1569 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10025304 [exp] 185 / 6e-49 AT2G37420 1244 / 0.0 ATP binding microtubule motor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Potri.006G085300.1 pacid=42770525 polypeptide=Potri.006G085300.1.p locus=Potri.006G085300 ID=Potri.006G085300.1.v4.1 annot-version=v4.1 ATGGAAGTTCAAAGCTGTTCAGTAAAAACACCCAAATCCCTTCAAACAAAACCCATGGACCCCAGCTGCACCTCTAAGGTTAGAGTAATTGTAAGGGTAC GCCCCTTTCTCTCTCACGAAATTCCTGCAAAAAATGGCAACCCAACTTCCTGTATTTCTGTTCTTGATCCAGATCCTGACTCCAGAGATGAAGTCACTGT TCATCTTCAAGATCCTGACACCAGCCGAAAGGAGTGCTATCAGTTGGACGCTTTTTTTGGTCAAGAGGATAACAATCTTAGATCCATTTTTGAGAGAGAA GTGAGCCCTTTAATTCCCGGGATGTTTAGGGGCCGTAATGCTACAGTTTTTGCTTATGGGGCTACTGGCAGTGGAAAGACCTACACTATGCAGGGTACCA ACTTGTTGCCAGGGCTAATGCCACTGGCCATGTCCACTATCCTGTCTATGTGTCAGAGAACAGGAAGTAGGGCAGAGATTTCATATTATGAAGTGTATAT TGAAAGGTGTTATGATCTATTAGAAGTTGGATCGAAAGAAATTGTTATTCAGGATGATAAAGATGGGATGGTGCACCTCAAGGGACTATCTCGAGTCCCA GTCAATTCAATTTCTGAATTTCAAGAGGTGTTTTCTCGTGGAATTCAGAGGCGTAAAACTGCAGGCACAGGTATCAATGATGTCTCTAGTAGGAGCCATG GAGTTCTTGTGGTAGCTGTCTCCACACCAGGTAGCGGTGATTCTGGGACTGTTGTGTCTGGGAAGCTTAACCTAATCGATTTGGCAGGTAATGAAGATAA CAGGAGGACTTGTAATGAAGGGATACGTCTACTAGAGAGTTCTAAAATCAACCAGTCATTGTTTGCATTATCTAATGTTATCCGTGCACTGAACAACAAA GAAACCCGAGTACCATATCGAGACAGCAAATTAACTCGTATTTTGCAGGACTCTCTTGGAGGAGCCAGTCATGCTTTGATGGTTGCTTGCCTTAATCCAG GAGAGTACCAAGAATCTGTTCGAACAGTGAGCTTGGCTGCTAGGTCAAGGCACATTTCAAATTTTGTTCCGTCAACCTATAAACAAGATACTCCGAAGGT TAAAGTTGATATGGAGGAAAAACTGCGAACTTGGCTTGAATCTAGAGGGAAGACAAAGAGTGCACAAAGAATAGATGCATATGGTTCTCCATTCCCTCCA AGTTCTATCACGAAACCAAATTACAGCTCCGCAAAAGCTAAGGTCAACACCTACCGGAACACTTGTAATGCTAAAGAGAGGGGATCGTCTGTACCATTCA GAAGTTTATTTAATGATGAAGGTTTAACTGATTCATGCTTGGAAAGTACGACTTGTGCTGCCGAGGAAAATAGGGAAAAGATCGGTGCTGATTCTACTGA AATTTCCTTGGAATCATCAATACACTTACCCATTGAGCCATTGGACAAGGAATATAAGATAACATCAACAAAGTCAAATAACTCAGTTGGAACATCACCC ATTGCCGAAGTGAAGTGTACAGAGAGAAGTCCTTTAAGAAGAGTTCTCTCCCCCATCAATGCAAATGGAAACCAAATTCGCCACGAGGAAGTAGCCTGCA AGTGTCCAGTTCAGTTTGAGCCAAAAACACCTTCTACTGCAACCTGTGCAAAAGAAAAGTTTGTAACAATCAGCACCCCACTTGACAAATTTAATGCAAT GAGTTCTAGTTTAAAGAGCTCCCTTATGCAAGAATATGTTGACATCTTGAATACCGCTAGCAGAGAGGAACTGTTGGAAATAAAGGGGATTGGAGTGAGA TTAGCAGATTACATAGCTGAACTCCGGGAAACAAGCCCTTTAAAATCGCTGAGTGATTTAGAGAAGATTGGTCTCTCGTCTAAGCAGGTTTACAACATGT TCAGCAAAGCTGCAAGAGGCATCTTTGATAAACAAGACGGTGCGCAGCTCAGAGAAGAGTTAATGTAA
AA sequence Show only first row Show all	>Potri.006G085300.1 pacid=42770525 polypeptide=Potri.006G085300.1.p locus=Potri.006G085300 ID=Potri.006G085300.1.v4.1 annot-version=v4.1 MEVQSCSVKTPKSLQTKPMDPSCTSKVRVIVRVRPFLSHEIPAKNGNPTSCISVLDPDPDSRDEVTVHLQDPDTSRKECYQLDAFFGQEDNNLRSIFERE VSPLIPGMFRGRNATVFAYGATGSGKTYTMQGTNLLPGLMPLAMSTILSMCQRTGSRAEISYYEVYIERCYDLLEVGSKEIVIQDDKDGMVHLKGLSRVP VNSISEFQEVFSRGIQRRKTAGTGINDVSSRSHGVLVVAVSTPGSGDSGTVVSGKLNLIDLAGNEDNRRTCNEGIRLLESSKINQSLFALSNVIRALNNK ETRVPYRDSKLTRILQDSLGGASHALMVACLNPGEYQESVRTVSLAARSRHISNFVPSTYKQDTPKVKVDMEEKLRTWLESRGKTKSAQRIDAYGSPFPP SSITKPNYSSAKAKVNTYRNTCNAKERGSSVPFRSLFNDEGLTDSCLESTTCAAEENREKIGADSTEISLESSIHLPIEPLDKEYKITSTKSNNSVGTSP IAEVKCTERSPLRRVLSPINANGNQIRHEEVACKCPVQFEPKTPSTATCAKEKFVTISTPLDKFNAMSSSLKSSLMQEYVDILNTASREELLEIKGIGVR LADYIAELRETSPLKSLSDLEKIGLSSKQVYNMFSKAARGIFDKQDGAQLREELM

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G02370			ATP binding microtubule motor ...		Potri.006G085300 [exp]	0	1
AT2G36200			P-loop containing nucleoside t...		Potri.016G077800 [exp]	3.00	0.9470
AT4G21270		KATAP, ATK1	KINESIN-LIKE PROTEIN IN ARABI...		Potri.011G031200 [exp]	6.92	0.9424	ATK1.2
AT3G57060			binding (.1.2)		Potri.006G041500 [exp]	7.74	0.9299
AT4G36930	bHLH	SPT, bHLH024	SPATULA, basic helix-loop-heli...		Potri.014G025800 [exp]	11.61	0.8929	ALC.2
AT1G11125			unknown protein		Potri.011G045700 [exp]	11.74	0.8807
AT3G23890		ATTOPII, TOPII	topoisomerase II (.1.2)		Potri.009G058900 [exp]	11.87	0.9383	TOP2.3
AT5G05240			Uncharacterised conserved prot...		Potri.019G058200 [exp]	12.00	0.9265
AT4G21820			binding;calmodulin binding (.1...		Potri.004G017500 [exp]	12.40	0.9259
AT3G63130		ATRANGAP1, RANG...	RAN GTPASE-ACTIVATING PROTEIN ...		Potri.005G209600 [exp]	12.48	0.9213	Pt-RANGAP1.1
AT4G33400			Vacuolar import/degradation, V...		Potri.002G126500 [exp]	12.64	0.9181

Compare expression of checked genes

Potri.006G085300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.