Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31180 709 / 0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) AT4G26870 668 / 0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT5G56680 121 / 5e-29 SYNC1ARATH, SYNC1, EMB2755 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT4G17300 119 / 2e-28 ATNS1, NS1, OVA8 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT1G70980 107 / 2e-24 SYNC3, SYNC1 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT3G07420 74 / 8e-14 ATNS2, SYNC2_ARATH, NS2 SYNTHETASE C2, asparaginyl-tRNA synthetase 2 (.1) AT3G11710 72 / 6e-13 ATKRS-1 lysyl-tRNA synthetase 1 (.1) AT4G33760 62 / 5e-10 tRNA synthetase class II (D, K and N) family protein (.1) AT3G13490 57 / 2e-08 ATKRS-2, OVA5 OVULE ABORTION 5, ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 2, Lysyl-tRNA synthetase, class II (.1) AT1G68420 40 / 0.0002 Class II aaRS and biotin synthetases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G129800 [exp] 122 / 2e-29 AT4G17300 872 / 0.0 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Potri.017G028800 [exp] 119 / 2e-28 AT4G17300 888 / 0.0 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Potri.006G153900 [exp] 114 / 9e-27 AT5G56680 929 / 0.0 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Potri.018G070000 [exp] 112 / 4e-26 AT5G56680 931 / 0.0 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Potri.018G090600 [exp] 85 / 3e-17 AT3G11710 937 / 0.0 lysyl-tRNA synthetase 1 (.1) Potri.006G166000 [exp] 82 / 2e-16 AT3G11710 936 / 0.0 lysyl-tRNA synthetase 1 (.1) Potri.018G090400 [exp] 82 / 3e-16 AT3G11710 946 / 0.0 lysyl-tRNA synthetase 1 (.1) Potri.002G249700 [exp] 81 / 9e-16 AT3G07420 654 / 0.0 SYNTHETASE C2, asparaginyl-tRNA synthetase 2 (.1) Potri.009G084300 [exp] 69 / 4e-12 AT4G33760 1004 / 0.0 tRNA synthetase class II (D, K and N) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018862 [exp] 738 / 0 AT4G31180 667 / 0.0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) Lus10028555 [exp] 624 / 0 AT4G31180 606 / 0.0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) Lus10028557 [exp] 248 / 2e-80 AT4G31180 235 / 8e-76 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) Lus10028556 [exp] 130 / 2e-35 AT4G31180 73 / 2e-15 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) Lus10032704 [exp] 117 / 2e-27 AT5G56680 907 / 0.0 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Lus10007470 [exp] 100 / 9e-22 AT4G17300 873 / 0.0 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Lus10028945 [exp] 96 / 9e-21 AT4G17300 740 / 0.0 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Lus10001440 [exp] 88 / 4e-18 AT3G11710 912 / 0.0 lysyl-tRNA synthetase 1 (.1) Lus10012920 [exp] 86 / 1e-17 AT5G56680 799 / 0.0 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Lus10001625 [exp] 84 / 9e-17 AT3G11710 900 / 0.0 lysyl-tRNA synthetase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0040 [poplar] [flax] tRNA_synt_II PF00152 [poplar] [flax] tRNA-synt_2 tRNA synthetases class II (D, K and N)
Representative CDS sequence Show only first row Show all	>Potri.006G085400.2 pacid=42767777 polypeptide=Potri.006G085400.2.p locus=Potri.006G085400 ID=Potri.006G085400.2.v4.1 annot-version=v4.1 ATGTCATCCGAATCCGAAATCCCCAAACCAGATCAAGAAGGAGAAGATGAATCCTCAAAATCAGCGAGCAAAAAAGCTGCAAAGAAGGAAGCAGCAAAGC AAGAGAAGTTACGTCGCCGTCAGGAAGCCGCTTTGGCCGCCGCCGCCGCGTCCTCACTTTCTATCGAGGAGGACCCACTCGCGGCGAACTATGGTAATAT TCCGCTTCAAGATCTGCAATCGAAGGTGGAAGCAGATCTAAAAGCGTGGACACAAGTCGGAGACCTGACTCATGAGTTGAAAGAAAAAGAGGTGTTGATT CGCGGCCGTGCGCAAACCACGCGCGCTGTTGGAAAAAATATGGCATTTGTTGTGGTTAGAGAGAAAGGTTTTACTGTGCAGTGTGTGGTTACTGCGCGGC CTGATGTAGTTAGTAAACAGATGGTCAAGTTTGCCGCTGGATTGAGCCGGGAGTCAATTGTTGATATCCATGGCGTTGTTTCTGTCCCCTCTATTGCTAT TAAGGGCACCACACAGCAGGTTGAGATTCAAGTTAGTAAGCTTTATTGTGTTGACAAAGCTATGCCGACACTTCCCATTAATATTGAGGATGCTTCTCGA AGTGAGAAGGAAATTGAAGAGGCTTTGGAGGCTGGAGAACAACTTGTTCGTGTCAATCAAGATACACGGCTGAATTATAGAGTTCTGGACTTTCGAACAT CTGCTAACCAAGGGATTTTCCGCATTCAATGTCAAGTTTGCAATATATTCAGGCAGTTCTTATTGTCAGAAGATTTTGTTGAAATCCACACACCAAAACT GATAGCAGGCTCCAGTGAAGGTGGTTCTGCTGTGTTTAAGCTGGACTACAAAGGGCAAGCTGCCTGCTTGGCTCAGTCACCTCAACTTCACAAGCAAATG GCAATTTGTGGTGATTTTGGGCGTGTTTTTGAGATTGGTCCAGTTTTTAGGGCAGAGGATTCTTACACTCATAGGCATTTATGCGAGTTTACCGGTCTTG ATGTTGAAATGGAGATTAAGCAACACTATACCGAGGTGATGGATATTGTTGACCATTTATTTGTCACAATGTTTGACCATTTGAATAAAAAGTGCAGCAA ATATCTTGAAGCAGTTGGGAGGCAATATCCATTTGAACCTTTGAAGTACCTGCCAAAGACTCTGCGCCTAAGATTTGAAGAGGGGGTTCAAATGCTCAAG GAAGCAGGAGTGGAAATTGATCCTTATGGGGACTTGAATACAGAATCAGAGAGAAAACTTGGGCAGCTTGTTTTGGAGAAGTACGGCACTGAGTTTTACA TTCTTCACCGGTATCCTTTGGCTGTTAGGCCATTCTACACCATGCCATGCTATGATGATCCAAAATACAGTAACTCATTTGATGTCTTTATTCGAGGTGA GGAGATAATTTCCGGAGCACAGCGTGTCCATGTACCAGAATTCTTGGTAGAACGTGCACAGGCATGTGGGATTGATGTCAGCACAATATCAACATACATT GATTCTTTCAGATATGGTGCCCCTCCTCATGGTGGGTTTGGAGCAGGGTTGGAGCGTGTGGTGATGCTATTCTGTGGTCTGAACAACATTCGTAAAACAT CACTTTTCCCTCGTGACCCGCTGAGGATCGCTCCATGA
AA sequence Show only first row Show all	>Potri.006G085400.2 pacid=42767777 polypeptide=Potri.006G085400.2.p locus=Potri.006G085400 ID=Potri.006G085400.2.v4.1 annot-version=v4.1 MSSESEIPKPDQEGEDESSKSASKKAAKKEAAKQEKLRRRQEAALAAAAASSLSIEEDPLAANYGNIPLQDLQSKVEADLKAWTQVGDLTHELKEKEVLI RGRAQTTRAVGKNMAFVVVREKGFTVQCVVTARPDVVSKQMVKFAAGLSRESIVDIHGVVSVPSIAIKGTTQQVEIQVSKLYCVDKAMPTLPINIEDASR SEKEIEEALEAGEQLVRVNQDTRLNYRVLDFRTSANQGIFRIQCQVCNIFRQFLLSEDFVEIHTPKLIAGSSEGGSAVFKLDYKGQAACLAQSPQLHKQM AICGDFGRVFEIGPVFRAEDSYTHRHLCEFTGLDVEMEIKQHYTEVMDIVDHLFVTMFDHLNKKCSKYLEAVGRQYPFEPLKYLPKTLRLRFEEGVQMLK EAGVEIDPYGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCYDDPKYSNSFDVFIRGEEIISGAQRVHVPEFLVERAQACGIDVSTISTYI DSFRYGAPPHGGFGAGLERVVMLFCGLNNIRKTSLFPRDPLRIAP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31180			Class II aminoacyl-tRNA and bi...		Potri.006G085400 [exp]	0	1
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Potri.008G042400 [exp]	1.00	0.7907	ATS9.3
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Potri.010G164200 [exp]	4.00	0.7591	ATS9.1
AT4G39280			phenylalanyl-tRNA synthetase, ...		Potri.004G155000 [exp]	4.00	0.7277
AT5G03290		IDH-V	isocitrate dehydrogenase V (.1...		Potri.016G091200 [exp]	8.48	0.7091
AT1G45000			AAA-type ATPase family protein...		Potri.002G031400 [exp]	8.66	0.7509	RPT4.2
AT2G34250			SecY protein transport family ...		Potri.001G387600 [exp]	10.95	0.7253
AT5G56280		CSN6A	COP9 signalosome subunit 6A (....		Potri.011G169900 [exp]	12.36	0.6995	Pt-CSN6.1
AT1G05350			NAD(P)-binding Rossmann-fold s...		Potri.015G096300 [exp]	14.49	0.7148
AT1G22920		CSN5A, JAB1, AJ...	ARABIDOPSIS JAB1 HOMOLOG 1, CO...		Potri.018G006100 [exp]	14.69	0.6921	AJH1.3
AT1G34760		RHS5, GF14OMICR...	ROOT HAIR SPECIFIC 5, general ...		Potri.005G164500 [exp]	14.96	0.6850

Compare expression of checked genes

Potri.006G085400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.