Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02310 1721 / 0 PRT6, CER3 proteolysis 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025352 [exp] 2135 / 0 AT5G02310 1775 / 0.0 proteolysis 6 (.1) Lus10024393 [exp] 2117 / 0 AT5G02310 1770 / 0.0 proteolysis 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02207 [poplar] [flax] zf-UBR Putative zinc finger in N-recognin (UBR box)
Representative CDS sequence Show only first row Show all	>Potri.006G085700.10 pacid=42768428 polypeptide=Potri.006G085700.10.p locus=Potri.006G085700 ID=Potri.006G085700.10.v4.1 annot-version=v4.1 ATGACGGATAACATGGATATCGATTTGCCTCCAGAACCTCCTAGCTCCATCGAGCCTCGTGATCGACTTCTTTTGAGGCTTACTCAGTTTGGAGTTCCCA AGGAGTACCGTGTTATGTTGCATTCTGGCCTGGTTGATTATATCATGGATAATTGGTCTCGCATACCAGAGCTAGTGGCAGCAATCTTGCCTATTGATGA TGAAGTGGCAGAGATTCTCCAAAATGCTAAGCTAGCCTCTAAAAAATCTGCTAGCCAGACAATGAAATACTGTTTCAGGGAATGCATGGTTTGGTTACAA TGGCTGATGTTTTTGGGCGAACCAGCTGTTGCACTTAAGAACCTATCTAAGATGAGTGCTGGGCGTGGTGTTTGCGGAGCTGTTTGGGGAAATAATGATA TAGCATATCGGTGCCAAACTTGTGAAAATGACCCCACATGTGCAATTTGTGTTCCTTGTTTTCAGAATGGGAACCACAAGGATCATGACTATTCTATTAT ATACACAGGCGGAGGTTGCTGTGATTGTGGGGATGTGACAGCATGGAAACGAGAGGGGTTCTGCTCAAAGCATAAAGGTGCTGAACAAATACAACCCCTT CCAGAGGAGTTTGCAAGATCTGTAGGGCCTGTCCTCGATGCTCTTCTAGGGTGTTGGAAAAATAAGCTAGTGTCTGCTGAAACCATCTCCCAGAAAAATC CAAATGCAGCTGATCGTGCTGCTATGGGCAAAAAGATTGCAAATCAGCTAGCATTTGCAGTTGTTGAGATGCTACTAGAGTTCTGTAAATGCAGTGAGAG TTTGCTTAGTTTTGTTTCCAGGAGGGTGATTTCTCTAGGAGGTTTATTGGAGATTCTTGTGAGGTCGGAGAGGTTCTTGAGTGAGGGTGTTGTGAAGAAA CTTCATGAGCTGCTCCTGAAATTGTTGGGAGAGCCCATTTTCAAGTACGAGTTCGCCAAAGAATTTTTGCGTTATTATCCATTTGTTGTACATGAAGCGA TGAAAGAAACTGTTGATGATATGCACAAGAAATATCCTTTGCTATCAATATTCTCTGTGCAAATTTTTACTGTGCCCACTCTCACCCCCCGACTTGTGAA GGAGATGAACTTGCTAGGCTTGTTGTTGGGGTGCTTGGAAGATATATTTATCCAGTGTGCTGGAGAAGATGGTCGTTTACAGTTTACCAAGTGGGCACAT TTGTATGAGATCGGTATACGTGTAGTTGAAGATGTTCGATTTGTTATGAGCCATGGTGTTGTACCAAAAAATGTAACTCATGAACAGAGGGCTGTCTTGA GAACTTGGATGGAACTTCTTTCTTTTCTGCAGGGGATGGGACCCTTAAAGAGAGAAACTAGCCTCTATGTAGAAGAAGAAAGTGAGAATATTAATTTGCT TTTTATTTTGTGTCATTCTATTGCCAACATCCATTCTCTTTTGGTGGATGGAGCATTTTCTATGTGTGAGGAGGCAGATGATGCTACTTTTCTTAACATG CTTGGAAAAGATATGGATGAACAAGATAGCATAAGACACACAAAAATTGGACGGCTGTCTCAGGAAAGCTCTGTATGTAGTGTGACAGAAAGTTCTTCAT TCATTTCTGCAGAGAAGGTTGTTGAAGTTGATTCAGATTCCACTTACCATCACCTACTTCCTTCCTCAGTGACGTGGTTAACCTATGAGTGCTTGAGGGC CATTGAGAATTGTTTGGGAGCTGATGATTCATCTGGGGCTCAAGTCTCTGGAGGTACTAGCAGCATTTCCAATAGCAACTTTTCAGCATTTAAGAAAAAA TTGTATAAGATTAGAAAAGGCAAATATATATTTGGTGGCCATGGCAGTACAAGCAAAGATGAATGTTTTTCAGTTGCATATAGTCGCTGCCATGCGAGTG TCAATGTAGATAATGCTAATGTAGTAAAGGACTGCAAAACAACAGTTCCTGGTGATACTGACTGTGCAGGCTCCAGTGACGGTTTGATGGAAGGCAGCAG TTCATCAGAATTGGACCTCCTACGATTTTTAAGTTTGTCTGATTGGCCAGACATAATTTATGATGTTAGTTCACATGATGTATCTGTTCACACTCCTTTG CATCGATTACTTTCCATGCTTTTACAAAAAGCATTAAGAAGGTGTTATGGTGGATCTGTGGTTATAAATGCAATCAATGCTAGCACCTCAACTTCATTAT CTAGAACTGATGATGATTTCTTTGGATGTCTTCTTGAGGGTTGCCACCCTTGTGGGTTTTCTGCCTTTGTTATGGAGCACCCTTTGCGGACTAGGGTGTT TTGTGCCCAGGTCCATGCTGGAATGTGGAGGAAGAATGGGGATGCTGCCATTTTATGCTGTGAGTGGTACCGCTCAGTACGCCGGTCTGAACAAGGTTTA GAGTTTGATCTATTTCTTCTGCAGTGCTGTGCTGTGCTGGCTCCACCTGACCTCTATGTCAGTAGAATTCTAGAACGTTTTGGGTTGTCAGACTACCTTT CTCTGAAAGCTGAGCAATCTACAGAGTATGAACCAGTTTTGATGCAGGAAATGCTCATGCTTCTTATACAAATTGTCCAGGAAAGGCGGTTTTCTGGGTT GACTCCTGCTGAAAATTTGAAGAGAGAGTTGGTTCATAAGTTAGCAATTGGAGATGCCACTCGCAGTCAATTAGTTAAATCCTTGCCCCGTGATCTCTCC AAGATTGACCAACTTCAGGAAGTTTTGGATACAGTTGCTGTATATTCTAATCCATCCGGCTTCAATCAGGGGATGTATTCTTTGCGCTGGGCATATTGGA AAGAGCTAGATCTGTACCACCCTCGTTGGAATTCACGGGATTTACAAGTTGCAGAAGAAAGATATTTGCGCTACTGTAGTGCTTCTGCAGGAACAACACA GCTTCCTAGGTGGACAAATATTTACCCTCCTCTTAAGGGCATAGCTAGAATAGCTAGTAGTAAAGTGGTCATTAAAATCATCCGTGCTGTATTATTTTAT GCTATTTTCATGCATAAGCGTGCTCCTGATGGTGTTCTTCTAACTGCACTGCACTTGCTCTCATTAGCATTAGACATCTGTATTCAGCAGAAAGAAATGG ATATGTCATTTCACATTGAAAACACCTCTTCTATGTTTGCTTTTGTGGGTGAAGAAATCCAAGAGGGATTAAATTACGGCTCTGGTGGCCAGAGCTTGCT GTCACTTCTTGTCTTGCTCATGAGGATACACAAGAGAGAGAGTTCTGACAACCTCTTGGAAGCAGGCAGTTACAACTTCTCTTCTTTGATTGAAAGTTTG TTGAAGAGGTTTGCAGAGATAGATGCTGGATGTATGACCAAACTGCAGCAACTTGCCCCTGAGATGGCCATTCATTTATCACAATCAGTTCCAAATATTG AGAAAAATACATTGGGTTCAGCTTCTGATAGTGAGAAACGCAAAGCCAAAGCTCTCGAGAGACAGGCTGCCATATTGGCAAAAATGAAAGCTGAGCAGTC CAAATTTTTGTTGAGTATGAACTCTGCTACTGATGATGTTTCAAATACTGGAGCAGAAGGAATTGACTCAGATGGCACACAGAATTTGGAAGAGTCGACG CAAGATGTTTGTTCTCTTTGCCATGATCCCAATTCCAAAAATCCTGTGTCCTTCTTGGTTCTGCTTCAGAAATCAAGGCTTTTGAGCTTCATTGACAGAG GCCCTCCATCATGGGATCAAGATCAGCTGCCTGACAAGGGGCAAAACTCTGTAATTGCAAAGGCATTGACCAATCAATCTGGAATAAGCTCTTCAAGTGG TTCGGGAATGATTTCATCTACCCAACTAACACATTTTGTTCAGGATGTAGTCAACCAATTTGCTAATTATGCTCAACCTGGGGAAGTAAATGCTATTATT GAATTCATCAAGGCTCGGTTCCCTTTATTAAGGAGTTCCCAAGTATCTTCTGCATCCAAGGATGGGAAAGATAAGACTATGAATACTTTTGAGATGTTAG AACAAGACATGTACTTCTCCATGCGGAAAGAAATGCATGATAATATGCTCGCTTCAAATTCTGGATTGCAGACTGAGAAATTTACAGCTGCTGAAGGTGG TCAGATAAGCAGTCCTGTTGAATCTGTATTGCTTGGAAAATATATAGCAGCTCTTTCTAGAGAGATAACAGAGCACCCTTCTTCTTCTGAAAGTTCTCCT AATGATGAGCTACAGGCAGAATTTCCTTCCCGGTCTCCCGCATATGATGGATTTGGCCCTGCAGATTGTGATGGGGTTCATCTATCTTCCTGTGGACATG CTGTGCATCAGGAATGTCTTGATCGCTATTTGTCATCATTGAAGGAACGATATGTCAGAAGAATTGTTTTTGAAGGAGGGCATATTGTCGACCCAGATCA GGGGGAATTTCTCTGCCCTGTATGTCGTCAACTAGCAAATTCTGTCTTGCCTTCATTGCCTGGGGATTTCCAAAAGGTTTGGAGACAGCCCATGATTTCA ACTGTCAGTTCACTGCATGCTGTGGGGGCTTTGGTCTCATCAAGTGAAGGATGTGATTCTCTTCAGCTTCAACATGCCTTGTTTCTCTTGAAATCTGCTG CAAAAATGGTTGAAAAGGGAGATATCTTGAAAGCTATTCCCTTGCAAAGGGGTGAAAAAATGTGGCCGAATCTTGATTCAATTTCCCGTCTCCTTATTAA ACTATATTTCCCAAACAGATGGGATAAGTTCTCAGGATCTGCAAGGGTAAACCATTCCATGATTATGTGGGATACTCTTAAGTATTCCCTTGTATCTATG GAGATTGCAGCACGTTGTGGAGGAACTCAAATGACTCCTACATATAGCCTAAATGCGTTGTACAAGGAACTCAAATCTACCAGTGGATTTACACTATCCT TGTTGCTCAAAATTGTCCAAAATTTGAGGAGTAAGAATCCTCTTCATGTGCTTCAGAGATTTAGGGGTATTCAGCTATTTGCAGAGTCTATTTGCGCAGG AGTTCCCAATGATTATCCCAGTGGTGCTTATAGGTGTGGAGAAAATATGTCGTGCATCTTAGCACACATTGGGAAGGAAGTTTCATACTCTGACGTTCAA TTTTGGAATTGGGTGGCTGAACCTGTCCTTGCTCATGATGCTTTTTCATCATTGATGTGGGCCCTGTTTTGTCTCCCATGCCCATTTCTGTCTTGTCAAG ATTCCTTATTGTCCCTTGTGCATGTTTTCTATGGTGCTTCTGTAGCTCAGGCTATAGTAATATTTTGTGGGAAACATCAACGTGAAATGAGGGAATCAAA TTTTGATGATTCTCTGATTACTGACATCTCCAAGGTTTTTGGGGAATCTGGATGCATCAAGGATTATTTTGTTTCCGACAACATCGATTCATCTTCTGAC ATCATCAATGTAATTCGTAGATTGAGTTTCCCTTACTTGAGGAGGTGTGCTTTGTTGTGGAAATTGCTGAGTACCTCGGTCTCAGCACCATTCTGTGATA GGGATGTGTTGAATAGATCATCTAACAATTACATGATGGATAACATGAGTGGAGCTCAAGACGAGCTTAATGAAGTTCAAGAGCTGGAAAAGATGTTCAA AATTCCTCCATTATTTTCTGTCCTCAAGGATCATACTCTACGATCTTTAGTTACAAAATGGCTCCATCATTTTTGCAAGCAGTATGAAGTCTTTAGCCCC CAACATGTTCTACATGTCACACCTGCAGTTCCATTCAAGTTAATGCACCTACCGCATGTTTACCAGGATCTACTGCAGAGGTATATAAAACAGAAATGTG TTGGCTGCAAGACTCTGCTTGATGACCCCGCTCTTTGCCTACTCTGTGGTAGAGTTTGCTCTCTCAACTGGAAGTCATGCTGCAGGGAAAGTGGATGCCA AACTCATGCTATGGCCTGCGGTGCTGGTACTGGTGTATTTCTGTTGATCAAGAGAACTACAATTCTGCTACAAAGATGCGCACGCCAGGCTCCTTGGCCA TCTCCATACTTGGATGCATTTGGTGAAGAGGATATTCAAATTCAGAGAGGAAAGCCATTGTACCTGAATGAGGAGCGCTATGCTGCACTCACTTACATGG TTGCTTCTCATGGCCTTGATCGGAGCTCTAAGGTTCTCGGCCAAACTACCATTGGATCCTTATTCTTGGTCTAG
AA sequence Show only first row Show all	>Potri.006G085700.10 pacid=42768428 polypeptide=Potri.006G085700.10.p locus=Potri.006G085700 ID=Potri.006G085700.10.v4.1 annot-version=v4.1 MTDNMDIDLPPEPPSSIEPRDRLLLRLTQFGVPKEYRVMLHSGLVDYIMDNWSRIPELVAAILPIDDEVAEILQNAKLASKKSASQTMKYCFRECMVWLQ WLMFLGEPAVALKNLSKMSAGRGVCGAVWGNNDIAYRCQTCENDPTCAICVPCFQNGNHKDHDYSIIYTGGGCCDCGDVTAWKREGFCSKHKGAEQIQPL PEEFARSVGPVLDALLGCWKNKLVSAETISQKNPNAADRAAMGKKIANQLAFAVVEMLLEFCKCSESLLSFVSRRVISLGGLLEILVRSERFLSEGVVKK LHELLLKLLGEPIFKYEFAKEFLRYYPFVVHEAMKETVDDMHKKYPLLSIFSVQIFTVPTLTPRLVKEMNLLGLLLGCLEDIFIQCAGEDGRLQFTKWAH LYEIGIRVVEDVRFVMSHGVVPKNVTHEQRAVLRTWMELLSFLQGMGPLKRETSLYVEEESENINLLFILCHSIANIHSLLVDGAFSMCEEADDATFLNM LGKDMDEQDSIRHTKIGRLSQESSVCSVTESSSFISAEKVVEVDSDSTYHHLLPSSVTWLTYECLRAIENCLGADDSSGAQVSGGTSSISNSNFSAFKKK LYKIRKGKYIFGGHGSTSKDECFSVAYSRCHASVNVDNANVVKDCKTTVPGDTDCAGSSDGLMEGSSSSELDLLRFLSLSDWPDIIYDVSSHDVSVHTPL HRLLSMLLQKALRRCYGGSVVINAINASTSTSLSRTDDDFFGCLLEGCHPCGFSAFVMEHPLRTRVFCAQVHAGMWRKNGDAAILCCEWYRSVRRSEQGL EFDLFLLQCCAVLAPPDLYVSRILERFGLSDYLSLKAEQSTEYEPVLMQEMLMLLIQIVQERRFSGLTPAENLKRELVHKLAIGDATRSQLVKSLPRDLS KIDQLQEVLDTVAVYSNPSGFNQGMYSLRWAYWKELDLYHPRWNSRDLQVAEERYLRYCSASAGTTQLPRWTNIYPPLKGIARIASSKVVIKIIRAVLFY AIFMHKRAPDGVLLTALHLLSLALDICIQQKEMDMSFHIENTSSMFAFVGEEIQEGLNYGSGGQSLLSLLVLLMRIHKRESSDNLLEAGSYNFSSLIESL LKRFAEIDAGCMTKLQQLAPEMAIHLSQSVPNIEKNTLGSASDSEKRKAKALERQAAILAKMKAEQSKFLLSMNSATDDVSNTGAEGIDSDGTQNLEEST QDVCSLCHDPNSKNPVSFLVLLQKSRLLSFIDRGPPSWDQDQLPDKGQNSVIAKALTNQSGISSSSGSGMISSTQLTHFVQDVVNQFANYAQPGEVNAII EFIKARFPLLRSSQVSSASKDGKDKTMNTFEMLEQDMYFSMRKEMHDNMLASNSGLQTEKFTAAEGGQISSPVESVLLGKYIAALSREITEHPSSSESSP NDELQAEFPSRSPAYDGFGPADCDGVHLSSCGHAVHQECLDRYLSSLKERYVRRIVFEGGHIVDPDQGEFLCPVCRQLANSVLPSLPGDFQKVWRQPMIS TVSSLHAVGALVSSSEGCDSLQLQHALFLLKSAAKMVEKGDILKAIPLQRGEKMWPNLDSISRLLIKLYFPNRWDKFSGSARVNHSMIMWDTLKYSLVSM EIAARCGGTQMTPTYSLNALYKELKSTSGFTLSLLLKIVQNLRSKNPLHVLQRFRGIQLFAESICAGVPNDYPSGAYRCGENMSCILAHIGKEVSYSDVQ FWNWVAEPVLAHDAFSSLMWALFCLPCPFLSCQDSLLSLVHVFYGASVAQAIVIFCGKHQREMRESNFDDSLITDISKVFGESGCIKDYFVSDNIDSSSD IINVIRRLSFPYLRRCALLWKLLSTSVSAPFCDRDVLNRSSNNYMMDNMSGAQDELNEVQELEKMFKIPPLFSVLKDHTLRSLVTKWLHHFCKQYEVFSP QHVLHVTPAVPFKLMHLPHVYQDLLQRYIKQKCVGCKTLLDDPALCLLCGRVCSLNWKSCCRESGCQTHAMACGAGTGVFLLIKRTTILLQRCARQAPWP SPYLDAFGEEDIQIQRGKPLYLNEERYAALTYMVASHGLDRSSKVLGQTTIGSLFLV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G02310		PRT6, CER3	proteolysis 6 (.1)		Potri.006G085700 [exp]	0	1
AT5G55600			agenet domain-containing prote...		Potri.001G365800 [exp]	1.41	0.9068
AT5G44090			Calcium-binding EF-hand family...		Potri.002G035800 [exp]	3.46	0.8726
AT3G17740			unknown protein		Potri.015G033300 [exp]	3.74	0.9007
AT2G44950		RDO4, HUB1	REDUCED DORMANCY 4, histone mo...		Potri.014G055800 [exp]	5.29	0.8721
AT2G22010		RKP	related to KPC1 (.1.2)		Potri.007G081900 [exp]	5.29	0.8580
AT3G17920			Outer arm dynein light chain 1...		Potri.012G045300 [exp]	9.53	0.8472
AT1G11060			WAPL (Wings apart-like protein...		Potri.011G049300 [exp]	9.74	0.8666
AT2G35050			Protein kinase superfamily pro...		Potri.001G123500 [exp]	10.58	0.8569
AT1G19110			inter-alpha-trypsin inhibitor ...		Potri.018G062500 [exp]	10.77	0.8036
AT5G19400		SMG7	Telomerase activating protein ...		Potri.006G038500 [exp]	10.81	0.8146

Compare expression of checked genes

Potri.006G085700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.