Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	AS1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37630 415 / 6e-145 MYB AtPHAN, AtMYB91, MYB91, AS1 ARABIDOPSIS PHANTASTICA-LIKE 1, MYB DOMAIN PROTEIN 91, ASYMMETRIC LEAVES 1, myb-like HTH transcriptional regulator family protein (.1) AT5G52600 95 / 7e-23 MYB AtMYB82 myb domain protein 82 (.1) AT1G25340 97 / 1e-22 MYB ATMYB116 myb domain protein 116 (.1.2) AT3G01530 94 / 2e-22 MYB ATMYB57 myb domain protein 57 (.1) AT5G59780 94 / 5e-22 MYB ATMYB59, ATMYB59-1, ATMYB59-3, ATMYB59-2 myb domain protein 59 (.1.2.3) AT1G74650 95 / 6e-22 MYB ATMYB31 AtY13 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 31, myb domain protein 31 (.1) AT1G68320 94 / 6e-22 MYB BW62C, BW62B, AtMYB62 myb domain protein 62 (.1) AT3G46130 94 / 6e-22 MYB PFG3, ATMYB111 ATMYB48, ATMYB48-3, ATMYB48-1, ATMYB48-2 myb domain protein 48 (.1.2.3.4) AT5G14750 92 / 6e-22 MYB WER1, WER, AtMYB66 WEREWOLF 1, WEREWOLF, myb domain protein 66 (.1) AT2G32460 97 / 8e-22 MYB ATMYB101, AtM1 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G112300 [exp] 198 / 2e-60 AT2G37630 188 / 2e-56 ARABIDOPSIS PHANTASTICA-LIKE 1, MYB DOMAIN PROTEIN 91, ASYMMETRIC LEAVES 1, myb-like HTH transcriptional regulator family protein (.1) Potri.004G102600 [exp] 193 / 2e-58 AT2G37630 243 / 9e-78 ARABIDOPSIS PHANTASTICA-LIKE 1, MYB DOMAIN PROTEIN 91, ASYMMETRIC LEAVES 1, myb-like HTH transcriptional regulator family protein (.1) Potri.015G046200 [exp] 101 / 5e-24 AT1G25340 241 / 2e-78 myb domain protein 116 (.1.2) Potri.012G055600 [exp] 100 / 6e-24 AT1G68320 244 / 1e-79 myb domain protein 62 (.1) Potri.011G040400 [exp] 99 / 3e-23 AT2G31180 163 / 6e-49 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.002G228700 [exp] 100 / 8e-23 AT2G32460 234 / 6e-71 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Potri.008G122100 [exp] 97 / 9e-23 AT1G68320 274 / 1e-91 myb domain protein 62 (.1) Potri.001G036000 [exp] 99 / 2e-22 AT5G06100 402 / 1e-134 myb domain protein 33 (.1.2.3) Potri.004G126700 [exp] 97 / 3e-22 AT3G28910 310 / 2e-104 myb domain protein 30 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024392 [exp] 439 / 2e-154 AT2G37630 456 / 3e-161 ARABIDOPSIS PHANTASTICA-LIKE 1, MYB DOMAIN PROTEIN 91, ASYMMETRIC LEAVES 1, myb-like HTH transcriptional regulator family protein (.1) Lus10025355 [exp] 401 / 6e-140 AT2G37630 422 / 2e-148 ARABIDOPSIS PHANTASTICA-LIKE 1, MYB DOMAIN PROTEIN 91, ASYMMETRIC LEAVES 1, myb-like HTH transcriptional regulator family protein (.1) Lus10040063 [exp] 103 / 5e-24 AT2G32460 229 / 1e-69 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Lus10009037 [exp] 98 / 2e-23 AT1G68320 231 / 1e-75 myb domain protein 62 (.1) Lus10021539 [exp] 100 / 5e-23 AT2G32460 226 / 5e-67 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Lus10002056 [exp] 97 / 3e-22 AT5G62470 320 / 6e-109 myb domain protein 96 (.1.2) Lus10009522 [exp] 96 / 4e-22 AT1G08810 284 / 9e-96 myb domain protein 60 (.1.2) Lus10026787 [exp] 97 / 6e-22 AT3G11440 301 / 4e-96 myb domain protein 65 (.1) Lus10005886 [exp] 94 / 6e-22 AT3G46130 265 / 1e-89 myb domain protein 48 (.1.2.3.4) Lus10008685 [exp] 97 / 1e-21 AT3G11440 357 / 3e-115 myb domain protein 65 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF13921 [poplar] [flax] Myb_DNA-bind_6 Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.006G085900.1 pacid=42770180 polypeptide=Potri.006G085900.1.p locus=Potri.006G085900 ID=Potri.006G085900.1.v4.1 annot-version=v4.1 ATGAAGGAGAGGCAGCGTTGGAGAGCTGAGGAGGACGCTTTACTACGTGCATACGTGAAACAATATGGTCCAAGGGAATGGAATCTTGTATCACAGCGCA TGAACACACCCCTAAACAGGGATGCTAAATCTTGCTTAGAAAGGTGGAAGAACTACCTCAAACCAGGGATAAAGAAAGGATCTCTTACAGAAGAAGAGCA GAGTCTTGTCATTCGGCTTCAGGCGAAACACGGGAACAAATGGAAGAAAATTGCAGCTGAAGTTCCAGGTCGAACAGCTAAGAGACTAGGCAAGTGGTGG GAGGTGTTCAAAGAGAAGCAACAGAGAGAGCTGAAGGAAAATAACAAGACAGTTGAGCCAATTGACGAGGGCAAGTACGATAGGATTTTAGAGACTTTTG CTGAGAAGCTAGTGAAAGAGCGCCCTTCTCCAGCATTTGTAATGGCCACTTCGAATGGGACCTTTCTTCATCCGGACCCCCATCCCCATCCCCATCCCCC TCCCCATCCCCATCCATCTACTCCAGCACCAACTATGCTCCCCCCTTGGCTTTCTAATTCTAACAGCACCTCCACTGTCAGGCCACCATCCCCCTCTGTA ACGCTAAGCCTCTCTCCATCAACAGTTGCGGCATCCCCTCCAATCCCATGGCTTCAACCTGAGAGAGGTCCGGAAAACACTCCTCTTGTTTTGGGCAATT TGCCACCTCATGGAATAGTCCCTGTTTGTGGTGAGAGCTTCTTGATGTCTGAGTTGGTCGATTGCTGTAGAGAATTGGAAGAAGGGCACCGCGCTTGGGC TGCACACAAAAAGGAGGCTGCCTGGAGGCTAAGAAGGGTAGAGTTGCAGCTGGAGTCAGAGAAGTCATGCCGAAGGAGGGAGAAAATGGAAGAGATAGAG TCAAAGATCAAGTCTCTTAGGGAAGAAGAAAAGGCATCTCTTGATAGGATTGAAGCAGAGTACAGGGAACAATTAACAGGGCTTAGAAGGGATGCAGAAA CCAAGGAACAGAAATTGTCCGACCAGTGGACTGCAAAGCATTTGCGTCTTACTAAGTTTCTCGAACAGATGTCTTGCAGACCTAGGCTTTCTGAGCCTAA TAGTCGTTAA
AA sequence Show only first row Show all	>Potri.006G085900.1 pacid=42770180 polypeptide=Potri.006G085900.1.p locus=Potri.006G085900 ID=Potri.006G085900.1.v4.1 annot-version=v4.1 MKERQRWRAEEDALLRAYVKQYGPREWNLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQSLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWW EVFKEKQQRELKENNKTVEPIDEGKYDRILETFAEKLVKERPSPAFVMATSNGTFLHPDPHPHPHPPPHPHPSTPAPTMLPPWLSNSNSTSTVRPPSPSV TLSLSPSTVAASPPIPWLQPERGPENTPLVLGNLPPHGIVPVCGESFLMSELVDCCRELEEGHRAWAAHKKEAAWRLRRVELQLESEKSCRRREKMEEIE SKIKSLREEEKASLDRIEAEYREQLTGLRRDAETKEQKLSDQWTAKHLRLTKFLEQMSCRPRLSEPNSR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37630	MYB	AtPHAN, AtMYB91...	ARABIDOPSIS PHANTASTICA-LIKE 1...		Potri.006G085900 [exp]	0	1	AS1.1
AT1G69780	HD	ATHB13	Homeobox-leucine zipper protei...		Potri.010G093400 [exp]	4.89	0.8375	ATHB13.3
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Potri.004G078200 [exp]	6.92	0.8058
AT3G18670			Ankyrin repeat family protein ...		Potri.011G016000 [exp]	8.30	0.8531
AT1G31040			PLATZ transcription factor fam...		Potri.001G159200 [exp]	10.48	0.8358
AT5G20635		AGG3	Arabidopsis G protein gamma su...		Potri.006G141100 [exp]	13.71	0.8489
AT1G75240	ZF_HD	ATHB33, ZHD5	zinc-finger homeodomain 5, hom...		Potri.007G024100 [exp]	18.11	0.8265
AT5G47800			Phototropic-responsive NPH3 fa...		Potri.016G003700 [exp]	18.33	0.7885
AT2G22840	GRF	ATGRF1	growth-regulating factor 1 (.1...		Potri.002G115100 [exp]	30.57	0.8227
AT5G59010			Protein kinase protein with te...		Potri.001G246400 [exp]	49.12	0.7616
AT2G38090	MYB	MYB-R	Duplicated homeodomain-like su...		Potri.006G097300 [exp]	50.00	0.8105

Compare expression of checked genes

Potri.006G085900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.