Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02270 511 / 0 ABCI20, ATNAP9 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) AT1G03905 277 / 2e-92 ABCI19 ATP-binding cassette I19, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G44110 276 / 3e-92 ABCI21, ATPOP1, ATNAP2, POP1 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN, ATP-binding cassette A21, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT4G25450 52 / 2e-07 ABCB28, ATNAP8 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 8, ATP-binding cassette B28, non-intrinsic ABC protein 8 (.1.2.3) AT2G41700 49 / 4e-06 AtABCA1, ABCA1 Arabidopsis thaliana ATP-binding cassette A1, ATP-binding cassette A1 (.1.2) AT3G47740 45 / 7e-05 ATATH2, ABCA3 A. THALIANA ABC2 HOMOLOG 2, ATP-binding cassette A3, ABC2 homolog 2 (.1) AT1G10680 44 / 9e-05 ABCB10, PGP10 ATP-binding cassette B10, P-glycoprotein 10 (.1) AT1G02520 44 / 0.0001 MDR8, ABCB11, PGP11 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) AT2G36910 43 / 0.0003 ATMDR1, ATPGP1, PGP1, ABCB1 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) AT3G47780 43 / 0.0003 ABCA7, ATATH6 A. THALIANA ABC2 HOMOLOG 6, ATP-binding cassette A7, ABC2 homolog 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G155800 [exp] 595 / 0 AT5G02270 503 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) Potri.005G226600 [exp] 285 / 1e-95 AT1G03905 435 / 3e-155 ATP-binding cassette I19, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G036300 [exp] 282 / 3e-94 AT1G03905 441 / 2e-157 ATP-binding cassette I19, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G073050 [exp] 54 / 8e-08 AT1G17840 659 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.005G073100 [exp] 54 / 1e-07 AT1G17840 661 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.016G093600 [exp] 50 / 1e-06 AT2G36910 2120 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.006G123900 [exp] 50 / 2e-06 AT2G36910 2138 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.018G087100 [exp] 46 / 2e-05 AT3G28345 1259 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.017G085000 [exp] 45 / 6e-05 AT3G28345 1774 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023792 [exp] 512 / 0 AT5G02270 530 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) Lus10003971 [exp] 514 / 9e-180 AT5G02270 530 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) Lus10010838 [exp] 501 / 2e-179 AT5G02270 514 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) Lus10024914 [exp] 274 / 7e-91 AT1G03905 439 / 2e-156 ATP-binding cassette I19, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10022909 [exp] 273 / 1e-90 AT1G03905 436 / 1e-155 ATP-binding cassette I19, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10029905 [exp] 54 / 1e-07 AT2G13610 743 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Lus10032911 [exp] 51 / 9e-07 AT3G28860 960 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10004496 [exp] 51 / 1e-06 AT2G13610 729 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Lus10011498 [exp] 50 / 2e-06 AT2G47800 1796 / 0.0 ATP-binding cassette C4, multidrug resistance-associated protein 4 (.1) Lus10023139 [exp] 49 / 6e-06 AT3G62700 1659 / 0.0 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF13304 [poplar] [flax] AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system
Representative CDS sequence Show only first row Show all	>Potri.006G086000.1 pacid=42769589 polypeptide=Potri.006G086000.1.p locus=Potri.006G086000 ID=Potri.006G086000.1.v4.1 annot-version=v4.1 ATGGGCGATATGGAGCATCAAGAACCAACAATAGTTATCAACGGCCTGAGATTCACGTACCCAGGAATCGACGGTCACCCACCTCCTGGGTCTAAACCGT TGATCGATGAGTTCTCTCTCAACCTCAATTCTGGTGATCGATGCCTTCTTGTTGGATCCAACGGCGCTGGGAAAACTACAATTCTGAAGATATTAGGAGG AAAACACATGGTGGAACCCCAAATGGTTCGTGTTCTAGGAAGGTCTGCTTTTCACGACACTGCTTTAACTTCTTCTGGACATCTTTCTTATCTTGGAGGA GAGTGGAGGCGAGAAGTTGCTTTTGCTGGTTTTGAGGTTCCGATACAAATGGATATTTCTGCGGAGAAGATGATATTTGGGGTGGCAGGTATTGATCCTC AAAGAAGAGCTGAGCTAATCAAGGTATTGGACATTGATCTGTCATGGAGGATGCACAAGGTTTCTGATGGCCAGAGAAGGCGGGTGCAAATTTGCATGGG TCTCCTGAGGCCATTCAAGGTTCTTCTTCTTGATGAGATAACGGTTGACCTCGATGTGCTAGCAAGGGCTGACCTTCTGAAGTTTCTAAGAAAGGAATGT GAAGAGCGAGGTGCTACAATTATCTATGCAACGCATATATTTGATGGTTTGGAGGAGTGGCCAACGCATATTTTGTATGTTGCTCATGGGAAGTTGCAAT TCGCATTGCCAATGGCCAAAATAAAAGAGACTAGTAATTTGTCACTAATGAGAACAGTGGAGAGCTGGCTGAGGAAGGAAAGAGATGAGGAGAGGAAAAG AAGACAAGAGAGAAAGGCAGGAGGTCTTCCAGAATATGAAAAGCAGGTTGAGGGAAGTCGAGTGACCGGTGATCCAGCTCGTGTTGGTGCTCGTGTTATG AACAATGGTTGGGCTGCAGGAAGGCTGCACTCCACCATTGCGGGTGAAGAGAACTTCTTCTTGAGCTCAAACAGGGTTTTGAGATAG
AA sequence Show only first row Show all	>Potri.006G086000.1 pacid=42769589 polypeptide=Potri.006G086000.1.p locus=Potri.006G086000 ID=Potri.006G086000.1.v4.1 annot-version=v4.1 MGDMEHQEPTIVINGLRFTYPGIDGHPPPGSKPLIDEFSLNLNSGDRCLLVGSNGAGKTTILKILGGKHMVEPQMVRVLGRSAFHDTALTSSGHLSYLGG EWRREVAFAGFEVPIQMDISAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLRPFKVLLLDEITVDLDVLARADLLKFLRKEC EERGATIIYATHIFDGLEEWPTHILYVAHGKLQFALPMAKIKETSNLSLMRTVESWLRKERDEERKRRQERKAGGLPEYEKQVEGSRVTGDPARVGARVM NNGWAAGRLHSTIAGEENFFLSSNRVLR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G02270		ABCI20, ATNAP9	ARABIDOPSIS THALIANA NON-INTRI...		Potri.006G086000 [exp]	0	1
AT5G01990			Auxin efflux carrier family pr...		Potri.016G141700 [exp]	1.73	0.8270
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Potri.014G132300 [exp]	2.00	0.8182
AT5G49480		ACP1, ATCP1	Ca2+-binding protein 1, Ca2+-b...		Potri.010G146900 [exp]	2.44	0.7866	Pt-CP1.1
AT5G49480		ACP1, ATCP1	Ca2+-binding protein 1, Ca2+-b...		Potri.008G103900 [exp]	2.82	0.7952	Pt-CP1.2
AT1G32100		ATPRR1	pinoresinol reductase 1 (.1)		Potri.001G133200 [exp]	3.00	0.7701	PCBERp5
AT4G21215			unknown protein		Potri.011G026900 [exp]	4.00	0.7765
					Potri.017G061800 [exp]	5.29	0.7809
AT1G48900			Signal recognition particle, S...		Potri.001G253500 [exp]	5.47	0.7914	SRP.4
AT2G01710			Chaperone DnaJ-domain superfam...		Potri.002G105500 [exp]	10.95	0.6941
					Potri.001G142300 [exp]	11.48	0.7525

Compare expression of checked genes

Potri.006G086000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.