Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	EXPA3.1,PtEXPA16
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37640 436 / 2e-156 ATHEXPALPHA1.9, ATEXP3, ATEXPA3, EXP3 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) AT2G39700 432 / 4e-155 ATHEXPALPHA1.6, ATEXP4, ATEXPA4 expansin A4 (.1) AT5G02260 426 / 6e-153 ATHEXPALPHA1.10, ATEXP9, ATEXPA9 expansin A9 (.1) AT2G28950 422 / 3e-151 ATHEXPALPHA1.8, ATEXP6, ATEXPA6 ARABIDOPSIS THALIANA TEXPANSIN 6, expansin A6 (.1) AT3G55500 416 / 7e-149 ATHEXPALPHA1.7, ATEXP16, ATEXPA16 EXPANSIN 16, expansin A16 (.1) AT5G56320 352 / 9e-124 ATHEXPALPHA1.5, ATEXP14, ATEXPA14 EXPANSIN 14, expansin A14 (.1) AT1G69530 351 / 3e-123 ATHEXPALPHA1.2, AT-EXP1, ATEXP1, ATEXPA1, EXP1 EXPANSIN 1, expansin A1 (.1.2.3.4.5) AT2G03090 347 / 1e-121 ATHEXPALPHA1.3, ATEXP15, ATEXPA15 EXPANSIN 15, expansin A15 (.1) AT5G05290 343 / 6e-120 ATHEXPALPHA1.12, ATEXP2, ATEXPA2 EXPANSIN 2, expansin A2 (.1) AT2G40610 335 / 4e-117 ATHEXPALPHA1.11, ATEXP8, ATEXPA8 expansin A8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G240900 [exp] 439 / 1e-157 AT2G39700 449 / 6e-162 expansin A4 (.1) Potri.009G031800 [exp] 437 / 3e-157 AT2G39700 453 / 1e-163 expansin A4 (.1) Potri.010G202500 [exp] 434 / 4e-156 AT2G39700 473 / 2e-171 expansin A4 (.1) Potri.008G057100 [exp] 427 / 2e-153 AT2G39700 459 / 6e-166 expansin A4 (.1) Potri.019G057500 [exp] 352 / 1e-123 AT2G40610 374 / 2e-132 expansin A8 (.1) Potri.006G108000 [exp] 348 / 2e-122 AT2G40610 379 / 2e-134 expansin A8 (.1) Potri.016G135200 [exp] 347 / 8e-122 AT2G40610 400 / 6e-143 expansin A8 (.1) Potri.001G001100 [exp] 347 / 1e-121 AT2G03090 375 / 5e-133 EXPANSIN 15, expansin A15 (.1) Potri.010G167200 [exp] 341 / 4e-119 AT1G69530 335 / 1e-116 EXPANSIN 1, expansin A1 (.1.2.3.4.5)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040801 [exp] 444 / 6e-160 AT2G39700 456 / 1e-164 expansin A4 (.1) Lus10016533 [exp] 444 / 8e-160 AT2G39700 456 / 9e-165 expansin A4 (.1) Lus10040286 [exp] 439 / 5e-158 AT2G39700 447 / 4e-161 expansin A4 (.1) Lus10023407 [exp] 439 / 1e-157 AT2G39700 445 / 3e-160 expansin A4 (.1) Lus10024388 [exp] 429 / 6e-154 AT2G37640 430 / 3e-154 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) Lus10010841 [exp] 374 / 8e-128 AT2G37640 373 / 6e-127 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) Lus10034227 [exp] 350 / 8e-123 AT2G40610 416 / 7e-149 expansin A8 (.1) Lus10042214 [exp] 348 / 4e-122 AT2G40610 393 / 7e-140 expansin A8 (.1) Lus10036763 [exp] 347 / 1e-121 AT1G69530 426 / 3e-153 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10037164 [exp] 344 / 2e-120 AT1G69530 420 / 2e-150 EXPANSIN 1, expansin A1 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF01357 [poplar] [flax] Expansin_C Expansin C-terminal domain CL0199 [poplar] [flax] DPBB PF03330 [poplar] [flax] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Potri.006G086100.1 pacid=42769161 polypeptide=Potri.006G086100.1.p locus=Potri.006G086100 ID=Potri.006G086100.1.v4.1 annot-version=v4.1 ATGGCTCATCATCGGTTAGGTTTGCTCTGCATTGTCTTCCTGACCTCGGTCTTTGTGTTGGCTCATGCGAGGATCCCTGGAGTTTTCACCGGTGGGCCTT GGGAGAGTGCTCATGCTACTTTCTATGGCGGGAGTGACGCCTCCGGAACTATGGGAGGTGCATGTGGGTATGGCAATCTGTATAGCCAAGGATATGGAGT GAACACGGCAGCATTAAGCACAGCGTTATTCAACAATGGGTTGAGCTGCGGGGCTTGCTTCGAGATTAAGTGCGCAGATGATCCAAGATGGTGCAACCCA GGAAACCCATCCATCCTTGTAACCGCCACTAATTTCTGCCCTCCTAACTTTGCTCAACCCAGCGATAATGGTGGTTGGTGTAACCCACCTCGTCCTCACT TTGACCTTGCTATGCCTATGTTCCTTAAGATCGCGCAGTACCGCGCTGGTATTGTCCCTGTCGCTCATCGCCGGGTACCGTGCAGGAAGCAAGGAGGCAT CAGATTCACTATCAACGGTTTCCGTTACTTCAACCTGGTTTTGGTGACCAACGTGGCGGGTGCAGGGGATATCGTGAATGTGTGGATCAAGGGCTCCGAG ACTGATTGGATGAGCATGAGCCGTAACTGGGGACAGAACTGGCAATCCAACGCCGTACTCGTGGGCCAGTCGCTTTCTTTCAGGGTTAGAGGCAGCGATG GCCGCACCTCTACTTCTAAGAACGTGGCATCACCTAATTGGCAGTTTGGTCAGACCTTCACGGGCAAAAACTTCCGCATCTGA
AA sequence Show only first row Show all	>Potri.006G086100.1 pacid=42769161 polypeptide=Potri.006G086100.1.p locus=Potri.006G086100 ID=Potri.006G086100.1.v4.1 annot-version=v4.1 MAHHRLGLLCIVFLTSVFVLAHARIPGVFTGGPWESAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCADDPRWCNP GNPSILVTATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKIAQYRAGIVPVAHRRVPCRKQGGIRFTINGFRYFNLVLVTNVAGAGDIVNVWIKGSE TDWMSMSRNWGQNWQSNAVLVGQSLSFRVRGSDGRTSTSKNVASPNWQFGQTFTGKNFRI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37640		ATHEXPALPHA1.9,...	ARABIDOPSIS THALIANA EXPANSIN ...		Potri.006G086100 [exp]	0	1	EXPA3.1,PtEXPA16
AT2G46210		AtSLD2	sphingoid LCB desaturase 2, Fa...		Potri.006G228200 [exp]	1.00	0.9255
AT1G67750			Pectate lyase family protein (...		Potri.008G182200 [exp]	1.73	0.8942
AT1G70230		AXY4, TBL27	ALTERED XYLOGLUCAN 4, TRICHOME...		Potri.008G146100 [exp]	2.00	0.9014
AT4G34760			SAUR-like auxin-responsive pro...		Potri.004G164400 [exp]	2.23	0.8820	SAUR29
AT3G18050			unknown protein		Potri.015G040900 [exp]	2.82	0.8845
AT3G18030		ATHAL3A	HALOTOLERANCE DETERMINANT 3, A...		Potri.015G089600 [exp]	4.47	0.8601
AT4G33670			NAD(P)-linked oxidoreductase s...		Potri.009G081300 [exp]	4.58	0.8287
AT3G24240			Leucine-rich repeat receptor-l...		Potri.005G117700 [exp]	4.89	0.8657
AT3G08030			Protein of unknown function, D...		Potri.001G263900 [exp]	9.16	0.8579
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Potri.017G125200 [exp]	10.67	0.7624

Compare expression of checked genes

Potri.006G086100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.