Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02250 1086 / 0 ATMTRNASEII, RNR1, EMB2730 ribonucleotide reductase 1, EMBRYO DEFECTIVE 2730, ARABIDOPSIS THALIANA MITOCHONDRIAL RNASE II, Ribonuclease II/R family protein (.1) AT2G17510 101 / 8e-22 EMB2763 EMBRYO DEFECTIVE 2763, ribonuclease II family protein (.1.2) AT1G77680 57 / 4e-08 Ribonuclease II/R family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G059100 [exp] 87 / 3e-17 AT2G17510 1546 / 0.0 EMBRYO DEFECTIVE 2763, ribonuclease II family protein (.1.2) Potri.005G174800 [exp] 73 / 8e-13 AT1G77680 1078 / 0.0 Ribonuclease II/R family protein (.1) Potri.002G086400 [exp] 69 / 1e-11 AT1G77680 1062 / 0.0 Ribonuclease II/R family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024387 [exp] 1080 / 0 AT5G02250 1066 / 0.0 ribonucleotide reductase 1, EMBRYO DEFECTIVE 2730, ARABIDOPSIS THALIANA MITOCHONDRIAL RNASE II, Ribonuclease II/R family protein (.1) Lus10010842 [exp] 238 / 7e-74 AT5G02250 241 / 6e-76 ribonucleotide reductase 1, EMBRYO DEFECTIVE 2730, ARABIDOPSIS THALIANA MITOCHONDRIAL RNASE II, Ribonuclease II/R family protein (.1) Lus10029500 [exp] 89 / 1e-17 AT2G17510 1543 / 0.0 EMBRYO DEFECTIVE 2763, ribonuclease II family protein (.1.2) Lus10025614 [exp] 69 / 1e-11 AT1G77680 1048 / 0.0 Ribonuclease II/R family protein (.1) Lus10014833 [exp] 67 / 5e-11 AT1G77680 1033 / 0.0 Ribonuclease II/R family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00773 [poplar] [flax] RNB RNB domain
Representative CDS sequence Show only first row Show all	>Potri.006G086200.1 pacid=42768174 polypeptide=Potri.006G086200.1.p locus=Potri.006G086200 ID=Potri.006G086200.1.v4.1 annot-version=v4.1 ATGATTTCGGTTCGAGCCGTTAACTCTTGCTCTATATTTCGCTCATCACCTCCCGTTTCTTCCTTCCGCTGCCGTCTCAATAGCCATTTGAGGACCACCA CCTCCTCCTCGCACCATGACCGCTACTCCAAATCAGGCTTTGGCTTCCCTGTGTTCCGGTTCGACCTTCCAATTCTTGGTCATGGCGATGTACGGAGCTA CTCCCTTCAAAGTTTCGTTGATACGGTGTTGGAAGAGCTGGCTTCTTATCGCAAACGCAAACGCCAAGGCATTTGCTCTGCTATCAAATTAACGACGGGT GGAGAGGCTTTAGATGATAAACTGGTGAACCAAGCGGTGGAGAAAGGATTATTAGTGGAGTTCAAGAAGGATTCAGAGAGAGTATTGCTGGCAGTGGTGC AGAGACGTGATGGAAAGAAGAATTGGATGGTGTACGATCAGAATGGTGTTACTTCCTCGATTAAACCCCAACAAATTACTTATATTGTTCCCGGTGTTGA TAATTTTGACCAAACCCAAATCTCAAGCTTTATTCAGAAAGCTCAGCAAAACTTGGACTCCTCGTTGCTTGAGTTTGCTTGGATTGAGCTTCTTGAAAAG AATAAGTCAGTTACACCAGAAGAATTAGCCGAGATGATTTTTGGCAGCGTGGAGCCTCTTGAAAGTTATTGTGCCCATCTTTTGCTATCAGAGGATGATC TATATTTCACTGTGCTGGAGACAAAAGGTTATCGCTCTATTTATGGGCCTCGACCTCCTATGCAGGTAGAAGAACTTATGCGTAGGAAGCTTGCAAAGGA AGCTGCTGAGAAAGAACTTCAGGAGTTTGTGCAACTACTAAAATCTGCCAAGGCAATGCCTTCAAATGCAAAACCCCCCAAAACTTCATGGGTGGTTGAA GAGAAAATCCGATGCAAAATTGAGTCTCTTGAAGCATATGCAATTGATGCATGCAAAAACAATGACCAAAAGAGAATTGCAGGGATGATCCTCACAGCAA TGGGAATGGGGAAAACAGCATCCTCTGCATTAAACCTCCTCATAGATATTGGATACTTTCCTGTCCATGTCAATCTTGATATGTTGAAGCTCAACATTCA TACTGATCATCCAGATGAGATCATATCAGCTGCTGAAGATCTTCTATCAGAGCCGGTTGACCCCGACAAGATTAACAGAAAAGATCTCACTCACTTGAAA GTCTATGCCATTGATGTTGATGAGGCTGATGAGCTTGATGACGCATTGAGTGCAACGAGGTTACAGGATGGGCGAATTAAAGTTTGGATACATGTTGCAG ATCCAGCGCGGTATGTACAGCCAGGGAGTAAAGTAGACAGAGAGGCAATGAGAAGAGGGACTTCTGTTTTCTTGCCCACCGCTACTTATCCCATGTTTCC AGAGAAACTTGCGATGGAAGGAATGAGTTTGAAACAGGGAGAGGTTTGCAATGCTGTTACTGTATCTGTTATTCTGCATTCTGATGGCTGCATTGCAGAA TACTCTGTGGATAACTCAATCATTAAACCAACCTATATGCTGACATACGAGAGTGCATCTGAGCTGCTTCATATGAACCTGGATGAGGAAGCTGAATTAA AACTTCTTTCTGAGGCTGCATCTCTTCGGTTACAGTGGCGTTGTGAACAGGGTGCAGTTGACACAGCCACATTAGAAACTCGCATCAAGGTCCCTAATCC AGAAGATCCAGAGCCTTCAATTAACCTCTATGTTGAAAACCAGGCTGACCCTGCAATGCGACTTGTCTCTGAGATGATGTTACTTTGTGGGGAAGTTATA GCCACTTATGGCTCTTGCAACAATATTCCTTTACCCTATAGGGGGCAGCCCCAATCAAATATTGATGTATCTGCATTCGCACATCTTCCTGAAGGACCTG TCAGGAGCGCAGCTATTGTTCGAATAATGCGCGGTGCTGAAATCGATATCAGGAAACCCATACGCCATGGAGTCTTGGGACTTCCTGGTTATGTTCAGTT TACTTCTCCCATCCGTAGATACTTGGATCTTCTTGCTCATTATCAGGTCAAAGCAGTTCTTAGAGGCGACTCCCCTCCTCTCTCTGCTGGTCAGCTGGAG GGTATGGCATCACTAATTAACATGCAAACTAGGGTAGTAAGGAGGCTCTGCAGCAGCAGTCTTCAATATTGGATGATAGAATTCTTGAAAAGGCAACCAA AGGAGAAAAAATATCGTGCATTGATCCTCAGGTTCATTAAAGATCGGGTTGCAGCTCTGCTACTAGTTGAGGTGGGGCTTCAAGCAACTGCCTGGGTGTC TCTGGGAACACAGATAGGAGATGAAGTGCAAGTTAGGGTAGAAGAAGCTCATCCACGTGATGATATTATTTCCCTTAAGGAGGTTGTAGTATAA
AA sequence Show only first row Show all	>Potri.006G086200.1 pacid=42768174 polypeptide=Potri.006G086200.1.p locus=Potri.006G086200 ID=Potri.006G086200.1.v4.1 annot-version=v4.1 MISVRAVNSCSIFRSSPPVSSFRCRLNSHLRTTTSSSHHDRYSKSGFGFPVFRFDLPILGHGDVRSYSLQSFVDTVLEELASYRKRKRQGICSAIKLTTG GEALDDKLVNQAVEKGLLVEFKKDSERVLLAVVQRRDGKKNWMVYDQNGVTSSIKPQQITYIVPGVDNFDQTQISSFIQKAQQNLDSSLLEFAWIELLEK NKSVTPEELAEMIFGSVEPLESYCAHLLLSEDDLYFTVLETKGYRSIYGPRPPMQVEELMRRKLAKEAAEKELQEFVQLLKSAKAMPSNAKPPKTSWVVE EKIRCKIESLEAYAIDACKNNDQKRIAGMILTAMGMGKTASSALNLLIDIGYFPVHVNLDMLKLNIHTDHPDEIISAAEDLLSEPVDPDKINRKDLTHLK VYAIDVDEADELDDALSATRLQDGRIKVWIHVADPARYVQPGSKVDREAMRRGTSVFLPTATYPMFPEKLAMEGMSLKQGEVCNAVTVSVILHSDGCIAE YSVDNSIIKPTYMLTYESASELLHMNLDEEAELKLLSEAASLRLQWRCEQGAVDTATLETRIKVPNPEDPEPSINLYVENQADPAMRLVSEMMLLCGEVI ATYGSCNNIPLPYRGQPQSNIDVSAFAHLPEGPVRSAAIVRIMRGAEIDIRKPIRHGVLGLPGYVQFTSPIRRYLDLLAHYQVKAVLRGDSPPLSAGQLE GMASLINMQTRVVRRLCSSSLQYWMIEFLKRQPKEKKYRALILRFIKDRVAALLLVEVGLQATAWVSLGTQIGDEVQVRVEEAHPRDDIISLKEVVV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G02250		ATMTRNASEII, RN...	ribonucleotide reductase 1, EM...		Potri.006G086200 [exp]	0	1
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Potri.013G089000 [exp]	2.44	0.9168
AT2G01440			DEAD/DEAH box RNA helicase fam...		Potri.010G112500 [exp]	3.60	0.9069
AT5G40160		EMB139, EMB506	embryo defective 506, EMBRYO D...		Potri.001G295200 [exp]	4.24	0.9204
AT2G31530		EMB2289, SCY2	SECY HOMOLOG 2, EMBRYO DEFECTI...		Potri.002G053900 [exp]	5.83	0.9023
AT1G10910		EMB3103	EMBRYO DEFECTIVE 3103, Pentatr...		Potri.003G019000 [exp]	8.06	0.8728
AT5G63420	Trihelix	EMB2746	embryo defective 2746, RNA-met...		Potri.012G095800 [exp]	8.12	0.9276
AT3G01370		ATCFM2	Arabidopsis thaliana CRM famil...		Potri.001G350801 [exp]	8.83	0.9188
AT3G46970		ATPHS2, PHS2	Arabidopsis thaliana alpha-glu...		Potri.004G048600 [exp]	9.48	0.9008
AT4G34830		PDE346, MRL1	PIGMENT DEFECTIVE 346, MATURAT...		Potri.004G166600 [exp]	12.40	0.9112
AT3G18390		EMB1865	embryo defective 1865, CRS1 / ...		Potri.012G056100 [exp]	13.26	0.9176

Compare expression of checked genes

Potri.006G086200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.