Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29050 422 / 4e-147 ATRBL1 RHOMBOID-like 1 (.1.2) AT3G53780 385 / 2e-132 ATRBL4 RHOMBOID-like protein 4 (.1.2) AT1G63120 308 / 3e-103 ATRBL2 RHOMBOID-like 2 (.1) AT1G12750 281 / 7e-93 ATRBL6 RHOMBOID-like protein 6 (.1.2.3) AT5G07250 275 / 1e-89 ATRBL3 RHOMBOID-like protein 3 (.1.2) AT4G23070 238 / 5e-76 ATRBL7 RHOMBOID-like protein 7 (.1) AT1G52580 218 / 6e-68 ATRBL5 RHOMBOID-like protein 5 (.1) AT1G77860 189 / 3e-56 KOM KOMPEITO, Rhomboid-related intramembrane serine protease family protein (.1) AT5G38510 45 / 6e-05 Rhomboid-related intramembrane serine protease family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G241300 [exp] 407 / 2e-141 AT2G29050 441 / 6e-155 RHOMBOID-like 1 (.1.2) Potri.009G031900 [exp] 402 / 3e-139 AT2G29050 434 / 7e-152 RHOMBOID-like 1 (.1.2) Potri.003G122900 [exp] 349 / 3e-119 AT1G63120 374 / 3e-130 RHOMBOID-like 2 (.1) Potri.001G108700 [exp] 340 / 2e-115 AT1G63120 332 / 8e-114 RHOMBOID-like 2 (.1) Potri.015G142000 [exp] 318 / 6e-107 AT5G07250 294 / 2e-98 RHOMBOID-like protein 3 (.1.2) Potri.012G139600 [exp] 295 / 1e-97 AT5G07250 324 / 6e-110 RHOMBOID-like protein 3 (.1.2) Potri.002G090400 [exp] 214 / 3e-65 AT1G77860 298 / 1e-98 KOMPEITO, Rhomboid-related intramembrane serine protease family protein (.1) Potri.017G112900 [exp] 47 / 2e-05 AT5G38510 364 / 3e-122 Rhomboid-related intramembrane serine protease family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023789 [exp] 488 / 6e-173 AT2G29050 488 / 3e-173 RHOMBOID-like 1 (.1.2) Lus10003971 [exp] 474 / 1e-162 AT5G02270 530 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) Lus10004965 [exp] 392 / 2e-135 AT2G29050 486 / 6e-173 RHOMBOID-like 1 (.1.2) Lus10005464 [exp] 357 / 2e-121 AT2G29050 453 / 1e-159 RHOMBOID-like 1 (.1.2) Lus10024497 [exp] 347 / 2e-118 AT1G63120 450 / 2e-160 RHOMBOID-like 2 (.1) Lus10017840 [exp] 343 / 1e-116 AT1G63120 441 / 9e-157 RHOMBOID-like 2 (.1) Lus10027436 [exp] 274 / 7e-89 AT5G07250 392 / 1e-135 RHOMBOID-like protein 3 (.1.2) Lus10003743 [exp] 209 / 2e-63 AT1G77860 333 / 1e-112 KOMPEITO, Rhomboid-related intramembrane serine protease family protein (.1) Lus10028036 [exp] 205 / 4e-62 AT1G77860 323 / 1e-108 KOMPEITO, Rhomboid-related intramembrane serine protease family protein (.1) Lus10023145 [exp] 46 / 3e-05 AT5G38510 339 / 7e-114 Rhomboid-related intramembrane serine protease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0207 [poplar] [flax] Rhomboid-like PF01694 [poplar] [flax] Rhomboid Rhomboid family
Representative CDS sequence Show only first row Show all	>Potri.006G086300.1 pacid=42768753 polypeptide=Potri.006G086301.1.p locus=Potri.006G086300 ID=Potri.006G086300.1.v4.1 annot-version=v4.1 ATGGAGAAAGAGCAATATCCAGTTCCTCCATCAGAGATCCAAACCAGGGTGAATTCAAGAAGAGGAGGAAACAACTCTATTATACACCCAGTAGAGATGG AAACACCTAATCATCAAGTGTCGCTGGCAGTGGCATCATCATCATCTCCAAGTCCAGTGGTGCATGGAAAAGCCAGGCCTTTCAAGAAATGGTGGCCTTG GTTAATACCTGCTTTTGTGATTGCCAATGTTGTTATGTTTATTATCACTATGTATGTCAACAACTGTCCCAAGAACTATGTCTCTTGTATTGCTCGGTTC TTGGGTAGGTTCTCTTTTCAGCCCTTCAAAGAGAACCCTCTTCTTGGTCCTTCATCCATTTCGCTACAGAAGATGGGGGCTCTAGATGTACAGAAAGTGG TTGATGGACATCAGTGGTGGCGGCTCATCACCTGCAATTGGTTACATGGAGGGGTTTTTCATTTGTTGGCGAATATGCTATCTCTTCTGGTTATTGGCAT TCGGCTCGAGCAGGAATTTGGGTTTGTAAAGGTTGGTTTGCTATATGTCATCTCTGGATTTGGTGGGAGTTTGCTATCGGCTCTTTTTATCCAATCGAAT ATCTCTGTTGGTGCTTCTGGTGCACTTTTTGGTTTACTTGGGAGCATGCTCTCTGAACTCATCACAAATTGGACTATATATGCTAACAAGGTGGCAGCTT TCATTACACTCGTGGTGATCATCGCTGTCAATCTAGCATTGGGAATTCTACCACATGTTGACAACTTCGCCCATATTGGAGGATTTCTTTCTGGTTTTCT CCTCGGGTTTGTGTTCCTGATCCGCCCACAGTTTGGATGGTTTAGTCAAAGACGTGCTCCTCTTGGGTATATTCCAGCCTCAGTAAAATCTAAGTTCAAG ACATATCAGTGTGCATTGTGGATCATATCTCTAATCCTTTTAATTGCTGGGCTTACCATTGGCATGGTTCTGCTTCTCCGGGGAGTTGATGCAAATGAAC ACTGTTCATGGTGTCATTATTTGTCTTGCGTCCCTACTGGAAAATGGAGTTGCAAAACTGAGCCTGCATACTGTTTGTCCACCCAAATAGGCAACCAGCT GAACTTAACGTGCTCAAGCAATGGAAAATCCAGCGTGTACATATTGCCTGGCGCAACGAGTTCTCAGATTCAGGGGTTATGCACTGGGCTCTGCCGTTGA
AA sequence Show only first row Show all	>Potri.006G086300.1 pacid=42768753 polypeptide=Potri.006G086301.1.p locus=Potri.006G086300 ID=Potri.006G086300.1.v4.1 annot-version=v4.1 MEKEQYPVPPSEIQTRVNSRRGGNNSIIHPVEMETPNHQVSLAVASSSSPSPVVHGKARPFKKWWPWLIPAFVIANVVMFIITMYVNNCPKNYVSCIARF LGRFSFQPFKENPLLGPSSISLQKMGALDVQKVVDGHQWWRLITCNWLHGGVFHLLANMLSLLVIGIRLEQEFGFVKVGLLYVISGFGGSLLSALFIQSN ISVGASGALFGLLGSMLSELITNWTIYANKVAAFITLVVIIAVNLALGILPHVDNFAHIGGFLSGFLLGFVFLIRPQFGWFSQRRAPLGYIPASVKSKFK TYQCALWIISLILLIAGLTIGMVLLLRGVDANEHCSWCHYLSCVPTGKWSCKTEPAYCLSTQIGNQLNLTCSSNGKSSVYILPGATSSQIQGLCTGLCR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G29050		ATRBL1	RHOMBOID-like 1 (.1.2)		Potri.006G086300 [exp]	0	1
AT3G53150		UGT73D1	UDP-glucosyl transferase 73D1 ...		Potri.016G097400 [exp]	4.58	0.9205	Pt-DOGT1.1
AT1G06840			Leucine-rich repeat protein ki...		Potri.019G131800 [exp]	4.89	0.9100
AT5G38210			Protein kinase family protein ...		Potri.017G118100 [exp]	10.95	0.8928
					Potri.007G113700 [exp]	15.87	0.8980
AT4G22810	AT-hook		Predicted AT-hook DNA-binding ...		Potri.001G115200 [exp]	17.88	0.9157
AT1G78290		SRK2C, SNRK2-8,...	SNF1-RELATED PROTEIN KINASE 2C...		Potri.005G072600 [exp]	18.16	0.8952
AT5G49525			unknown protein		Potri.010G148300 [exp]	19.36	0.8402
AT3G47570			Leucine-rich repeat protein ki...		Potri.006G273001 [exp]	19.89	0.8825
AT5G25930			Protein kinase family protein ...		Potri.018G057100 [exp]	20.78	0.8788
AT5G16770	MYB	ATMYB9	myb domain protein 9 (.1.2)		Potri.019G050900 [exp]	22.09	0.8990	MYB101.1

Compare expression of checked genes

Potri.006G086300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.