Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43290 162 / 2e-48 WRKY ATWRKY49, WRKY49 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 49, WRKY DNA-binding protein 49 (.1) AT1G69310 100 / 1e-24 WRKY ATWRKY57, WRKY57 WRKY DNA-binding protein 57 (.1.2) AT1G64000 97 / 5e-24 WRKY ATWRKY56, WRKY56 WRKY DNA-binding protein 56 (.1) AT5G41570 95 / 2e-23 WRKY ATWRKY24, WRKY24 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 24, WRKY DNA-binding protein 24 (.1) AT1G29860 97 / 3e-23 WRKY ATWRKY71, WRKY71 WRKY DNA-binding protein 71 (.1) AT4G39410 97 / 3e-23 WRKY ATWRKY13, WRKY13 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 13, WRKY DNA-binding protein 13 (.1) AT2G44745 94 / 8e-23 WRKY WRKY12 WRKY family transcription factor (.1) AT2G47260 96 / 2e-22 WRKY ATWRKY23, WRKY23 WRKY DNA-binding protein 23 (.1) AT2G46130 90 / 2e-22 WRKY ATWRKY43, WRKY43 WRKY DNA-binding protein 43 (.1.2) AT5G49520 96 / 3e-22 WRKY ATWRKY48, WRKY48 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G099900 [exp] 387 / 4e-136 AT5G43290 151 / 6e-44 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 49, WRKY DNA-binding protein 49 (.1) Potri.008G094000 [exp] 106 / 1e-26 AT1G69310 213 / 3e-68 WRKY DNA-binding protein 57 (.1.2) Potri.010G160100 [exp] 104 / 6e-26 AT1G69310 208 / 4e-66 WRKY DNA-binding protein 57 (.1.2) Potri.008G103300 [exp] 101 / 3e-24 AT5G49520 170 / 3e-49 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Potri.010G147700 [exp] 99 / 2e-23 AT5G49520 182 / 8e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Potri.014G090700 [exp] 93 / 1e-22 AT2G46130 169 / 2e-54 WRKY DNA-binding protein 43 (.1.2) Potri.003G169100 [exp] 92 / 2e-22 AT5G13080 168 / 2e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Potri.002G164900 [exp] 92 / 2e-22 AT2G46130 172 / 6e-56 WRKY DNA-binding protein 43 (.1.2) Potri.002G193000 [exp] 95 / 3e-22 AT2G47260 185 / 3e-56 WRKY DNA-binding protein 23 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024380 [exp] 178 / 2e-54 AT5G43290 157 / 7e-47 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 49, WRKY DNA-binding protein 49 (.1) Lus10010851 [exp] 158 / 4e-47 AT5G43290 148 / 1e-43 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 49, WRKY DNA-binding protein 49 (.1) Lus10036891 [exp] 101 / 3e-24 AT1G69310 220 / 5e-70 WRKY DNA-binding protein 57 (.1.2) Lus10037094 [exp] 100 / 4e-24 AT1G69310 209 / 1e-65 WRKY DNA-binding protein 57 (.1.2) Lus10017067 [exp] 99 / 1e-23 AT5G49520 184 / 2e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Lus10037785 [exp] 99 / 2e-23 AT5G49520 179 / 4e-53 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Lus10036401 [exp] 94 / 1e-22 AT1G64000 170 / 1e-54 WRKY DNA-binding protein 56 (.1) Lus10004612 [exp] 95 / 2e-22 AT1G29860 188 / 3e-58 WRKY DNA-binding protein 71 (.1) Lus10004537 [exp] 95 / 2e-22 AT1G29860 188 / 1e-58 WRKY DNA-binding protein 71 (.1) Lus10007906 [exp] 93 / 2e-22 AT1G64000 168 / 6e-54 WRKY DNA-binding protein 56 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03106 [poplar] [flax] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Potri.006G087000.1 pacid=42770086 polypeptide=Potri.006G087000.1.p locus=Potri.006G087000 ID=Potri.006G087000.1.v4.1 annot-version=v4.1 ATGGAAGAAGTAATAAAGAGTAGTACATGGTTTGATCATGAGAGTGAAGATGAGCTTGTTAGAGAGCTTCTTGATGATGAATCTCCTTTCTTTTTCTTGC CAAAGGAGAAAAACCAATCCAAACCAAGTCCTACGAATGAACAAACTATTAACCAGCTCACATCCAAAGTCTATTCAGGCCCAACAATCCAAGATATTGA GAATGCTTTATCGACGTCAAGCAGAGAAGACCAATCCCAAGCAGTTTCACAAGCCAGAATTTCATTGTTGCAAAAGGGTTTGAGTAAGATGGAGAACAAC AAGTACACTCTAAAACTGAAGAGATGTGGCGATGGGATGGCTGATGATGGTTATAAATGGAGGAAATATGGGCAAAAATCTATCAAGAACAGCCCACATC CTAGAAGCTATTATAGGTGCACGAACGCACGGTGCAGTGCAAAAAAGCAGGTGGAGAGGTGCAGCGAGGATCCAGACACACTCGTCATCACTTACGAAGG ACTCCATTTACACTTTACATACCCTTACTTCTTATCGAACCAGCCACAGCATGATGATCCACCTTCCAAGAAGCCTAAAGGAACCATTTCAGAAGCCGAG TTCCAAGCCCATGCAACCCAACGAACACCAGAACAAGCCCAAGAGTACTCGGCACATGTCACCAGTCCTGGTTCCCTGCCTAGCACCAGCACAGCTGATG ATTACGTGCATGAATCGGGTTTGGAAGCAATAGGTCCTCAAGGGTTGCTTGAAGATGTGGTGCCTTATATGGTTCGGAATCCATCAAACTACAACGTGTC TTCAAATTCCTCATCTTCATCTTACCGTTCTCCGCCTGCCTCACCACCTTCCTCCCTGTCTTGGTCTCCTTCCCATTCATTTTTCGATATTGCCTTGGAT ACTAGCATCGCATGA
AA sequence Show only first row Show all	>Potri.006G087000.1 pacid=42770086 polypeptide=Potri.006G087000.1.p locus=Potri.006G087000 ID=Potri.006G087000.1.v4.1 annot-version=v4.1 MEEVIKSSTWFDHESEDELVRELLDDESPFFFLPKEKNQSKPSPTNEQTINQLTSKVYSGPTIQDIENALSTSSREDQSQAVSQARISLLQKGLSKMENN KYTLKLKRCGDGMADDGYKWRKYGQKSIKNSPHPRSYYRCTNARCSAKKQVERCSEDPDTLVITYEGLHLHFTYPYFLSNQPQHDDPPSKKPKGTISEAE FQAHATQRTPEQAQEYSAHVTSPGSLPSTSTADDYVHESGLEAIGPQGLLEDVVPYMVRNPSNYNVSSNSSSSSYRSPPASPPSSLSWSPSHSFFDIALD TSIA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G43290	WRKY	ATWRKY49, WRKY4...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.006G087000 [exp]	0	1
AT2G30140			UDP-Glycosyltransferase superf...		Potri.009G077200 [exp]	1.41	0.9297
AT3G49950	GRAS		GRAS family transcription fact...		Potri.007G053500 [exp]	3.00	0.9310
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Potri.006G097800 [exp]	6.32	0.9086
AT2G18360			alpha/beta-Hydrolases superfam...		Potri.009G116900 [exp]	8.00	0.9106
AT4G24140		BDG3	alpha/beta-Hydrolases superfam...		Potri.001G083400 [exp]	13.52	0.9205
AT1G49430		LRD2, LACS2	LATERAL ROOT DEVELOPMENT 2, lo...		Potri.009G109900 [exp]	18.00	0.8772	Pt-LACS2.2
AT4G00400		AtGPAT8, GPAT8	glycerol-3-phosphate acyltrans...		Potri.014G085500 [exp]	20.78	0.8819
AT1G01120		KCS1	3-ketoacyl-CoA synthase 1 (.1)		Potri.002G178000 [exp]	22.36	0.8343	Pt-KCS1.1
AT1G30700			FAD-binding Berberine family p...		Potri.001G462300 [exp]	33.67	0.8979
AT5G66450			Phosphatidic acid phosphatase ...		Potri.005G120400 [exp]	34.14	0.8139

Compare expression of checked genes

Potri.006G087000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.