Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09320 409 / 3e-145 DHHC-type zinc finger family protein (.1) AT5G04270 214 / 4e-69 DHHC-type zinc finger family protein (.1) AT4G22750 95 / 1e-22 DHHC-type zinc finger family protein (.1.2) AT4G00840 93 / 4e-22 DHHC-type zinc finger family protein (.1) AT4G22753 94 / 1e-21 ATSMO1-3, ATSMO1, SMO1-3 sterol 4-alpha methyl oxidase 1-3 (.1.2) AT3G60800 89 / 3e-20 DHHC-type zinc finger family protein (.1) AT5G50020 68 / 1e-12 DHHC-type zinc finger family protein (.1.2) AT3G56930 66 / 3e-12 DHHC-type zinc finger family protein (.1.2) AT5G41060 64 / 1e-11 DHHC-type zinc finger family protein (.1.2) AT5G05070 63 / 4e-11 DHHC-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G100200 [exp] 485 / 3e-175 AT3G09320 426 / 5e-152 DHHC-type zinc finger family protein (.1) Potri.010G226100 [exp] 245 / 8e-81 AT5G04270 296 / 3e-101 DHHC-type zinc finger family protein (.1) Potri.001G117100 [exp] 94 / 3e-22 AT3G60800 365 / 6e-127 DHHC-type zinc finger family protein (.1) Potri.003G115600 [exp] 91 / 7e-21 AT3G60800 346 / 2e-119 DHHC-type zinc finger family protein (.1) Potri.002G147300 [exp] 89 / 3e-20 AT3G60800 441 / 3e-157 DHHC-type zinc finger family protein (.1) Potri.014G069200 [exp] 89 / 3e-20 AT3G60800 447 / 9e-160 DHHC-type zinc finger family protein (.1) Potri.014G104000 [exp] 87 / 1e-19 AT4G00840 297 / 5e-101 DHHC-type zinc finger family protein (.1) Potri.014G153600 [exp] 67 / 2e-12 AT5G41060 230 / 2e-71 DHHC-type zinc finger family protein (.1.2) Potri.001G325400 [exp] 64 / 2e-11 AT3G26935 688 / 0.0 DHHC-type zinc finger family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024377 [exp] 434 / 4e-155 AT3G09320 426 / 9e-152 DHHC-type zinc finger family protein (.1) Lus10010852 [exp] 427 / 2e-152 AT3G09320 418 / 6e-149 DHHC-type zinc finger family protein (.1) Lus10038701 [exp] 260 / 1e-86 AT5G04270 298 / 2e-102 DHHC-type zinc finger family protein (.1) Lus10037973 [exp] 180 / 2e-55 AT5G04270 207 / 1e-66 DHHC-type zinc finger family protein (.1) Lus10024561 [exp] 99 / 8e-24 AT3G60800 411 / 2e-145 DHHC-type zinc finger family protein (.1) Lus10032199 [exp] 99 / 8e-24 AT3G60800 409 / 2e-144 DHHC-type zinc finger family protein (.1) Lus10002694 [exp] 84 / 2e-18 AT4G00840 353 / 4e-122 DHHC-type zinc finger family protein (.1) Lus10015872 [exp] 80 / 2e-17 AT4G22750 241 / 4e-88 DHHC-type zinc finger family protein (.1.2) Lus10028737 [exp] 64 / 2e-11 AT4G24630 582 / 0.0 DHHC-type zinc finger family protein (.1) Lus10010447 [exp] 63 / 6e-11 AT3G56930 451 / 3e-152 DHHC-type zinc finger family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [poplar] [flax] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Potri.006G087400.1 pacid=42767315 polypeptide=Potri.006G087400.1.p locus=Potri.006G087400 ID=Potri.006G087400.1.v4.1 annot-version=v4.1 ATGAAGCGACCCCTCAGCTTCTCCCTTCCGGTAACCGTCGTCGTTTTAGCCATACTTTACATTTACTTGTCCACGATCTTTGTTTTTATAGACCGTTGGT TCGGTCTCATGTCTTCCCCAGGCATCATGAACGCCGTCGTTTTCACAGCTCTTGCTCTCATGTCTGTTTTTAACTATGCCATCGCTATCTTGACGGATCC GGGACGGGTCCCTCCCTCTTTCATGCCCGATGTCGAAGACTCTGATAACCCAGTCCACGAGATCAAACGCAAAGGAGGAGACTTGAGATTTTGCCAGAAG TGTTCTCACTTCAAGCCTCCACGTGCTCATCATTGCCGTGTTTGCAGAAGATGCGTGTTGCGAATGGATCATCATTGCATTTGGATAAGTAATTGTGTGG GCCACGCAAACTATAAGGTCTTCTTCGTCTTCGTTGTGTATGCTGTAATAGCATGCATCTACTCCCTGGTCTTGCTTGTTGGTAGTCTAACTGTTGACCC TCAAAAGGATGAGCTGCAAAGTGGTGACTCTTTCAGAACCATATATGTCATTTCTGGGCTGTTGCTAGTTCCGTTAAGTGCGGCACTTGGTGTTCTTTTG GGTTGGCATGTGTACCTAATTTTGCAAAACAAAACCACTATCGAGTACCATGAAGGGGTGAGAGCTATGTGGCTAGCAGAGAAAGGAGGGCATGTCTATA AGCACCCGTATGATGTGGGCGCTTATGAAAATCTGACAACGGTCTTGGGTCCAAGTATCTTCTGCTGGGTGTGCCCAACATCAGGACATATTGGTTCAGG TCTCCGCTTCCGTACAGCCTATGATAGTATGACCGGTGCATCCGTGAGATAA
AA sequence Show only first row Show all	>Potri.006G087400.1 pacid=42767315 polypeptide=Potri.006G087400.1.p locus=Potri.006G087400 ID=Potri.006G087400.1.v4.1 annot-version=v4.1 MKRPLSFSLPVTVVVLAILYIYLSTIFVFIDRWFGLMSSPGIMNAVVFTALALMSVFNYAIAILTDPGRVPPSFMPDVEDSDNPVHEIKRKGGDLRFCQK CSHFKPPRAHHCRVCRRCVLRMDHHCIWISNCVGHANYKVFFVFVVYAVIACIYSLVLLVGSLTVDPQKDELQSGDSFRTIYVISGLLLVPLSAALGVLL GWHVYLILQNKTTIEYHEGVRAMWLAEKGGHVYKHPYDVGAYENLTTVLGPSIFCWVCPTSGHIGSGLRFRTAYDSMTGASVR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G09320			DHHC-type zinc finger family p...		Potri.006G087400 [exp]	0	1
AT5G51150			Mitochondrial import inner mem...		Potri.012G113700 [exp]	7.07	0.7900
AT5G28350			Quinoprotein amine dehydrogena...		Potri.014G087900 [exp]	10.00	0.8255
AT5G23720		PHS1	PROPYZAMIDE-HYPERSENSITIVE 1, ...		Potri.015G105000 [exp]	11.57	0.8055	Pt-PHS1.2
AT3G48860			unknown protein		Potri.015G104600 [exp]	17.32	0.7816
AT4G23895			Pleckstrin homology (PH) domai...		Potri.001G091100 [exp]	18.76	0.7712
AT1G71820		SEC6	SEC6 (.1.2)		Potri.019G088100 [exp]	22.27	0.7847
AT5G19280	FHA	RAG1, KAPP	ROOT ATTENUATED GROWTH 1, kina...		Potri.010G091500 [exp]	24.14	0.7804	Pt-KAPP.2
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.001G472800 [exp]	31.19	0.7858	WRKY2.2
AT5G44280		ATRING1A	ARABIDOPSIS THALIANA RING 1A, ...		Potri.004G047000 [exp]	33.24	0.7764
AT5G04420			Galactose oxidase/kelch repeat...		Potri.008G031200 [exp]	34.72	0.7825

Compare expression of checked genes

Potri.006G087400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.