Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02190 548 / 0 EMB24, ATASP38, PCS1 PROMOTION OF CELL SURVIVAL 1, EMBRYO DEFECTIVE 24, ARABIDOPSIS THALIANA ASPARTIC PROTEASE 38, Eukaryotic aspartyl protease family protein (.1) AT2G39710 528 / 0 Eukaryotic aspartyl protease family protein (.1) AT1G66180 259 / 1e-81 Eukaryotic aspartyl protease family protein (.1) AT5G37540 238 / 1e-73 Eukaryotic aspartyl protease family protein (.1) AT2G03200 140 / 1e-36 Eukaryotic aspartyl protease family protein (.1) AT3G54400 126 / 7e-32 Eukaryotic aspartyl protease family protein (.1) AT3G25700 125 / 1e-31 Eukaryotic aspartyl protease family protein (.1.2) AT5G10770 121 / 7e-30 Eukaryotic aspartyl protease family protein (.1) AT5G07030 120 / 2e-29 Eukaryotic aspartyl protease family protein (.1) AT5G45120 120 / 2e-29 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G058000 [exp] 565 / 0 AT2G39710 607 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.010G201400 [exp] 549 / 0 AT2G39710 583 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G087550 [exp] 328 / 3e-112 AT5G02190 234 / 8e-76 PROMOTION OF CELL SURVIVAL 1, EMBRYO DEFECTIVE 24, ARABIDOPSIS THALIANA ASPARTIC PROTEASE 38, Eukaryotic aspartyl protease family protein (.1) Potri.017G131800 [exp] 256 / 2e-80 AT1G66180 570 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.004G085000 [exp] 248 / 3e-77 AT1G66180 605 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G306200 [exp] 142 / 1e-37 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1) Potri.019G002100 [exp] 140 / 1e-36 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.018G014800 [exp] 131 / 1e-33 AT5G10770 312 / 9e-102 Eukaryotic aspartyl protease family protein (.1) Potri.003G195500 [exp] 128 / 1e-32 AT3G54400 559 / 0.0 Eukaryotic aspartyl protease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024375 [exp] 671 / 0 AT5G02190 572 / 0.0 PROMOTION OF CELL SURVIVAL 1, EMBRYO DEFECTIVE 24, ARABIDOPSIS THALIANA ASPARTIC PROTEASE 38, Eukaryotic aspartyl protease family protein (.1) Lus10040279 [exp] 525 / 0 AT2G39710 566 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10004713 [exp] 525 / 0 AT2G39710 567 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10002707 [exp] 521 / 0 AT2G39710 585 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10000514 [exp] 480 / 3e-169 AT2G39710 541 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10010854 [exp] 318 / 2e-108 AT5G02190 294 / 4e-99 PROMOTION OF CELL SURVIVAL 1, EMBRYO DEFECTIVE 24, ARABIDOPSIS THALIANA ASPARTIC PROTEASE 38, Eukaryotic aspartyl protease family protein (.1) Lus10010855 [exp] 323 / 6e-104 AT5G02170 501 / 2e-171 Transmembrane amino acid transporter family protein (.1.2) Lus10003999 [exp] 135 / 1e-34 AT1G01300 636 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10023445 [exp] 130 / 5e-33 AT5G33340 448 / 9e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10035961 [exp] 122 / 3e-30 AT2G03200 525 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [poplar] [flax] Peptidase_AA PF00026 [poplar] [flax] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Potri.006G087600.1 pacid=42770598 polypeptide=Potri.006G087600.1.p locus=Potri.006G087600 ID=Potri.006G087600.1.v4.1 annot-version=v4.1 ATGTTTCATTCCATCATGGAAAGCACTTCCATTCCCTGCACTTCTTACACAAACCCATATCTCAAATCCCTTTTTCTTCTCTCTCACACTGTCTTAACAC TTCTCTTGATTATGGAATCTCAACACTGCTTGTCTTCTTCACCAAAAATGCTGATCCTGCCACTCAAAACCCAAGTTATCCCTTCCGGGTCAGTACCCAG ATCACCAAACAAGCTTCCTTTCCACCACAATGTGAGTCTTATCGTCTCTCTCACGGTTGGCACTCCACCACAAAATGTCTCCATGGTTATTGACACCGGA AGTGAACTCTCCTGGCTGCATTGCAACAAAACACTATCCTACCCAACTACATTCGACCCGACCCGATCCACATCTTACCAAACCATCCCTTGTTCTTCAC CCACCTGCACCAATCGGACCCAGGACTTCCCTATACCTGCTTCATGTGACTCCAATAATCTCTGCCACGCCACCCTTTCTTATGCTGACGCTTCGTCCTC CGATGGAAATCTCGCGTCCGATGTTATCCACATTGGGAGCTCCGATATTTCCGGTTTGGTCTTTGGGTGCATGGATTCGGTTTTCAGTTCTAACTCTGAT GAGGATTCTAAGAGTACCGGTTTAATGGGCATGAACCGTGGGTCGCTCTCTTTTGTTTCCCAATTGGGTTTCCCGAAATTCTCTTATTGCATTTCAGGAA CCGATTTTTCGGGTCTTTTACTTCTCGGCGAGTCCAATTTGACGTGGTCGGTGCCATTAAACTACACCCCCTTAATCCAAATATCAACCCCATTGCCTTA CTTTGATCGGGTTGCCTACACGGTACAGCTTGAAGGCATTAAAGTTTTAGATAAGTTGCTTCCTATACCGAAATCAACTTTCGAACCGGATCATACAGGT GCTGGTCAAACCATGGTTGACTCGGGAACCCAGTTCACGTTCTTACTCGGACCTGTTTACAATGCTTTGAGAAGCGCGTTTCTGAACCAAACCAGCAGTG TTTTAAGGGTTTTAGAGGATCCAGATTTTGTATTTCAAGGGGCTATGGATTTATGTTACCTGGTCCCGCTAAGTCAACGTGTTTTACCACTGTTGCCAAC GGTAACTTTAGTGTTTCGGGGAGCCGAAATGACAGTATCGGGTGATAGGGTATTATATCGGGTCCCGGGTGAATTGAGGGGAAATGACTCGGTGCATTGC TTGTCATTTGGGAACTCTGATTTGTTGGGTGTGGAAGCATATGTGATTGGTCATCATCACCAACAAAACGTGTGGATGGAATTTGATCTTGAGAAATCAA GGATTGGATTGGCTCAGGTACGGTGTGATTTGGCTGGCCAGAGATTTGGTGTGGCCCTGTAG
AA sequence Show only first row Show all	>Potri.006G087600.1 pacid=42770598 polypeptide=Potri.006G087600.1.p locus=Potri.006G087600 ID=Potri.006G087600.1.v4.1 annot-version=v4.1 MFHSIMESTSIPCTSYTNPYLKSLFLLSHTVLTLLLIMESQHCLSSSPKMLILPLKTQVIPSGSVPRSPNKLPFHHNVSLIVSLTVGTPPQNVSMVIDTG SELSWLHCNKTLSYPTTFDPTRSTSYQTIPCSSPTCTNRTQDFPIPASCDSNNLCHATLSYADASSSDGNLASDVIHIGSSDISGLVFGCMDSVFSSNSD EDSKSTGLMGMNRGSLSFVSQLGFPKFSYCISGTDFSGLLLLGESNLTWSVPLNYTPLIQISTPLPYFDRVAYTVQLEGIKVLDKLLPIPKSTFEPDHTG AGQTMVDSGTQFTFLLGPVYNALRSAFLNQTSSVLRVLEDPDFVFQGAMDLCYLVPLSQRVLPLLPTVTLVFRGAEMTVSGDRVLYRVPGELRGNDSVHC LSFGNSDLLGVEAYVIGHHHQQNVWMEFDLEKSRIGLAQVRCDLAGQRFGVAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G02190		EMB24, ATASP38,...	PROMOTION OF CELL SURVIVAL 1, ...		Potri.006G087600 [exp]	0	1
AT2G01505		CLE16	CLAVATA3/ESR-RELATED 16 (.1)		Potri.010G111200 [exp]	7.61	0.9526
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Potri.001G109700 [exp]	12.08	0.9449
AT5G18080		SAUR24	small auxin up RNA 24, SAUR-li...		Potri.004G165400 [exp]	12.96	0.9426
AT1G29510		SAUR68	SMALL AUXIN UPREGULATED 68, SA...		Potri.009G141100 [exp]	15.23	0.9404	SAUR55
AT4G24340			Phosphorylase superfamily prot...		Potri.013G082700 [exp]	18.97	0.9400
AT1G34640			peptidases (.1)		Potri.002G096700 [exp]	24.39	0.9396
AT3G22800			Leucine-rich repeat (LRR) fami...		Potri.010G083100 [exp]	26.72	0.9397
AT1G14430			glyoxal oxidase-related protei...		Potri.001G083600 [exp]	26.98	0.9392
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Potri.019G094000 [exp]	27.49	0.9388
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.013G115900 [exp]	29.10	0.9361

Compare expression of checked genes

Potri.006G087600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.