Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02560 316 / 1e-111 Ribosomal protein S7e family protein (.1.2) AT5G16130 315 / 3e-111 Ribosomal protein S7e family protein (.1) AT1G48830 311 / 2e-109 Ribosomal protein S7e family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G099200 [exp] 380 / 5e-137 AT3G02560 314 / 6e-111 Ribosomal protein S7e family protein (.1.2) Potri.017G115400 [exp] 378 / 4e-136 AT3G02560 315 / 4e-111 Ribosomal protein S7e family protein (.1.2) Potri.016G100400 [exp] 377 / 1e-135 AT3G02560 313 / 1e-110 Ribosomal protein S7e family protein (.1.2) Potri.015G046100 [exp] 109 / 1e-31 AT1G48830 110 / 1e-32 Ribosomal protein S7e family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034909 [exp] 323 / 2e-114 AT1G48830 331 / 1e-117 Ribosomal protein S7e family protein (.1.2) Lus10017497 [exp] 321 / 3e-113 AT1G48830 325 / 3e-115 Ribosomal protein S7e family protein (.1.2) Lus10023638 [exp] 320 / 3e-113 AT1G48830 330 / 4e-117 Ribosomal protein S7e family protein (.1.2) Lus10028789 [exp] 321 / 2e-110 AT1G48830 330 / 2e-113 Ribosomal protein S7e family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0652 [poplar] [flax] S24e_L23_L15e PF01251 [poplar] [flax] Ribosomal_S7e Ribosomal protein S7e
Representative CDS sequence Show only first row Show all	>Potri.006G087900.3 pacid=42766921 polypeptide=Potri.006G087900.3.p locus=Potri.006G087900 ID=Potri.006G087900.3.v4.1 annot-version=v4.1 ATGTTCTCGACTAAGAAGAAGATCCAAAAGGACAAGGATGCTGAACCCACTGAGTTTGAGGAGACGGTTGCCCAGGCATTATTTGATTTGGAAAATACCA ACTCAGACCTGAAAAGTGATCTAAAAGATCTCTTTATAAATTCCGCAGTTCAAATAGATGTTGCCGGAAATCGCAAAGCTATTGTTATCTATGTTCCCTA TAGGCTGAGGAAAGCTTACCGCAAGGTTCATCTTCGCCTTGTTCGAGAGCTTGAGAAAAAGTTCAGTGGGAAGGATGTTGTTCTGCTTGCTACCCGAAGG ATTGTGCGGCCACCCAAAAAAGGGTCTGCTGTTCAGCGTCCCCGCTCCCGTACCCTAACTGCCGTGCATGAAGCCATGCTTGAGGATTTAGTGTATCCTG CTGAGATTGTTGGAAAGCGCACCAGATACAGGATTGATGGATCCAAAATTAGCAAGATCTTCTTGGATCCCAAGGAGCGCAACAACACCGAGTATAAACT GGAGTCATATGCTGGAGTTTACAGGAAGCTTACAGGGAAAGATGTGGTTTTTGATTTCCCTGTAACAGAGGCCTGA
AA sequence Show only first row Show all	>Potri.006G087900.3 pacid=42766921 polypeptide=Potri.006G087900.3.p locus=Potri.006G087900 ID=Potri.006G087900.3.v4.1 annot-version=v4.1 MFSTKKKIQKDKDAEPTEFEETVAQALFDLENTNSDLKSDLKDLFINSAVQIDVAGNRKAIVIYVPYRLRKAYRKVHLRLVRELEKKFSGKDVVLLATRR IVRPPKKGSAVQRPRSRTLTAVHEAMLEDLVYPAEIVGKRTRYRIDGSKISKIFLDPKERNNTEYKLESYAGVYRKLTGKDVVFDFPVTEA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02560			Ribosomal protein S7e family p...		Potri.006G087900 [exp]	0	1
AT2G32060			Ribosomal protein L7Ae/L30e/S1...		Potri.005G206300 [exp]	1.73	0.9445	Pt-RPS12.3
AT5G19180		ECR1	E1 C-terminal related 1 (.1)		Potri.008G204000 [exp]	2.44	0.9202	Pt-ECR1.1
AT5G45775			Ribosomal L5P family protein (...		Potri.011G068900 [exp]	5.47	0.9387	Pt-L16.1
AT5G48760			Ribosomal protein L13 family p...		Potri.017G054600 [exp]	6.24	0.9344	RPL13.2
AT2G43780			unknown protein		Potri.019G096500 [exp]	9.00	0.9018
AT1G04170		EIF2 GAMMA, EIF...	eukaryotic translation initiat...		Potri.003G104900 [exp]	10.24	0.8959	EIF2.4
AT3G59540			Ribosomal L38e protein family ...		Potri.007G131800 [exp]	16.43	0.9202
AT4G31060	AP2_ERF		Integrase-type DNA-binding sup...		Potri.006G080300 [exp]	16.97	0.8753
AT5G39740		OLI7, RPL5B	OLIGOCELLULA 7, ribosomal prot...		Potri.019G099000 [exp]	17.54	0.9248
AT4G28390		ATAAC3, AAC3	ADP/ATP carrier 3 (.1)		Potri.017G012800 [exp]	17.74	0.8770	Pt-AAC3.1

Compare expression of checked genes

Potri.006G087900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.