Plant FIBer expression Database

Potri.006G088000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G09350 517 / 0 Fes1A Fes1A (.1.2.3)
AT3G53800 457 / 4e-161 Fes1B Fes1B (.1)
AT5G02150 409 / 8e-143 Fes1C Fes1C (.1.2)
AT3G51980 82 / 4e-17 ARM repeat superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G100500
[exp]
659 / 0 AT3G09350 472 / 3e-167 Fes1A (.1.2.3)
Potri.001G072200
[exp]
74 / 2e-14 AT3G51980 414 / 5e-144 ARM repeat superfamily protein (.1)
Potri.003G158701
[exp]
64 / 2e-11 AT3G51980 251 / 3e-82 ARM repeat superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003961
[exp]
554 / 0 AT3G09350 523 / 0.0 Fes1A (.1.2.3)
Lus10023786
[exp]
546 / 0 AT3G09350 522 / 0.0 Fes1A (.1.2.3)
Lus10023269
[exp]
79 / 6e-16 AT3G51980 397 / 4e-137 ARM repeat superfamily protein (.1)
Lus10038535
[exp]
77 / 4e-15 AT3G51980 404 / 1e-139 ARM repeat superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF08609 Fes1 Nucleotide exchange factor Fes1
Representative CDS sequence
>Potri.006G088000.2 pacid=42770394 polypeptide=Potri.006G088000.2.p locus=Potri.006G088000 ID=Potri.006G088000.2.v4.1 annot-version=v4.1
ATGGCAAAAGACGGACCCAACTGGGACGGATTGCTCAAGTGGAGCCTTGCCCATTCTGATGGGACTTCTTCTAATCGCAATCTCAGCGAGGAGGATAGAA
GATGGTTTATGGAAGCAATGCAATCAAAAAGTGTTGATGTAGTAAAGAGGATGAAGGAGATAACTCTTGTGATGCAGACCCCTGAACAAGTGTTGGAGTC
TCAAGGAGTTACTCCTGCTGATATCGAAGATTTGTTGGATGAGCTACAAGAACATGTTGAAGCCATTGACATGGCCAATGATCTTCACTCGATCGGGGGT
TTGGTTCCTCTCCTTGGTTATCTAAAGAACACCCATGCTAATGTTCGAGCAAAGGCTGCTGAAGTTGTAACCACCATTGTCCAGAACAACCCTAGGAGTC
AGCAACTGGTTATGGAAGCAAATGGTTTTGAGCCTCTGCTTTCTAATTTCACTTCAGATCCTGATGTGACTGTTAGAACAAAAGCACTAGGTGCAATATC
ATCTTTAATCCGACATAACAAGCCAGGTATTGCTGCATTTCGTCTAGGGAATGGTTTTGCAGCTTTGAGAGATGCCCTGGGTTCTGGGAATGTGAGATTT
CAAAGAAAAGCGCTGAACTTGATCCATTACCTACTGCATGAGAATAGTTCAGATGGCAGCATAGTCAGTGATCTGGGGTTCCCCCGCATAATGTTGCACC
TTGCCTCAAGTGAAGATGCAGAAGTACGAGAAGCTGCCCTTCGTGGCCTTCTTGAACTTGCTCGAAACAAAATAGATGGGAACACTGGTAGATTATGTGA
AGATGATGAAATATTGAAGCAAGTCCTTGAAGAACGGGTTAATGGTATCAGCCTGATGTCACCTGAAGATCTTGGGGCAGCTAGGGAAGAAAGGCAGCTT
GTAGACTCCCTCTGGAATGCTTGCTACAATGAACCATCATCTCTACGTGATAAGGGGCTTCTTGTTCTCCCTGGAGAAGATTCACCACCTCCTGATGTTG
CCAGCAAGCATTTTGAACCTCCTCTTAGAGCTTGGGCTGCCAGACCTGATGCTGGTAAAAATCCCGGTACTGAAAAGAAACAAGCACCCTTGTTATTAGG
ATTGGGCCCTGCACCTGAGGCTGCTAATGTCCAAGGGACCTCAAGTGGTGAAGTCAATGGTGATGAGCATAACACCACCTCTACATAA
AA sequence
>Potri.006G088000.2 pacid=42770394 polypeptide=Potri.006G088000.2.p locus=Potri.006G088000 ID=Potri.006G088000.2.v4.1 annot-version=v4.1
MAKDGPNWDGLLKWSLAHSDGTSSNRNLSEEDRRWFMEAMQSKSVDVVKRMKEITLVMQTPEQVLESQGVTPADIEDLLDELQEHVEAIDMANDLHSIGG
LVPLLGYLKNTHANVRAKAAEVVTTIVQNNPRSQQLVMEANGFEPLLSNFTSDPDVTVRTKALGAISSLIRHNKPGIAAFRLGNGFAALRDALGSGNVRF
QRKALNLIHYLLHENSSDGSIVSDLGFPRIMLHLASSEDAEVREAALRGLLELARNKIDGNTGRLCEDDEILKQVLEERVNGISLMSPEDLGAAREERQL
VDSLWNACYNEPSSLRDKGLLVLPGEDSPPPDVASKHFEPPLRAWAARPDAGKNPGTEKKQAPLLLGLGPAPEAANVQGTSSGEVNGDEHNTTST

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G09350 Fes1A Fes1A (.1.2.3) Potri.006G088000
[exp]
0 1
AT3G07090 PPPDE putative thiol peptidase... Potri.002G241700
[exp]
2.64 0.9841
AT5G35320 unknown protein Potri.018G132600
[exp]
4.00 0.9698
AT5G48570 ROF2, ATFKBP65 FKBP-type peptidyl-prolyl cis-... Potri.014G149400
[exp]
4.24 0.9796
AT1G03070 Bax inhibitor-1 family protein... Potri.002G049000
[exp]
4.47 0.9798
AT1G53540 HSP20-like chaperones superfam... Potri.001G339150
[exp]
4.89 0.9832
AT5G37670 HSP15.7CI HSP20-like chaperones superfam... Potri.017G130700
[exp]
5.19 0.9811
AT4G22740 glycine-rich protein (.1.2) Potri.003G115400
[exp]
5.29 0.9791
AT5G35320 unknown protein Potri.006G070900
[exp]
6.16 0.9664
AT4G25200 ATHSP23.6-MITO mitochondrion-localized small ... Potri.003G076000
[exp]
6.32 0.9804
AT2G30000 PHF5-like protein (.1) Potri.009G072300
[exp]
7.07 0.9370

Potri.006G088000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.