Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02140 373 / 1e-131 Pathogenesis-related thaumatin superfamily protein (.1) AT1G18250 233 / 5e-77 ATLP-1 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G73620 232 / 3e-76 Pathogenesis-related thaumatin superfamily protein (.1) AT5G24620 228 / 5e-73 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G75030 221 / 4e-72 ATLP-3 thaumatin-like protein 3 (.1) AT1G75800 220 / 1e-70 Pathogenesis-related thaumatin superfamily protein (.1) AT1G77700 220 / 2e-70 Pathogenesis-related thaumatin superfamily protein (.1) AT1G19320 211 / 3e-68 Pathogenesis-related thaumatin superfamily protein (.1) AT4G38660 209 / 2e-66 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G75050 205 / 3e-66 Pathogenesis-related thaumatin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G200800 [exp] 332 / 7e-116 AT5G02140 339 / 4e-118 Pathogenesis-related thaumatin superfamily protein (.1) Potri.015G039200 [exp] 234 / 1e-77 AT1G73620 352 / 1e-123 Pathogenesis-related thaumatin superfamily protein (.1) Potri.012G047800 [exp] 231 / 3e-76 AT1G73620 379 / 3e-134 Pathogenesis-related thaumatin superfamily protein (.1) Potri.014G040700 [exp] 220 / 6e-72 AT1G75030 342 / 5e-120 thaumatin-like protein 3 (.1) Potri.005G173900 [exp] 221 / 1e-71 AT1G77700 316 / 2e-107 Pathogenesis-related thaumatin superfamily protein (.1) Potri.002G087100 [exp] 218 / 8e-71 AT1G77700 384 / 2e-134 Pathogenesis-related thaumatin superfamily protein (.1) Potri.015G000800 [exp] 217 / 5e-70 AT5G24620 351 / 4e-120 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.012G004800 [exp] 216 / 4e-69 AT5G24620 358 / 1e-122 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.001G210400 [exp] 211 / 1e-67 AT1G77700 273 / 1e-90 Pathogenesis-related thaumatin superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003962 [exp] 401 / 2e-143 AT5G02140 387 / 4e-137 Pathogenesis-related thaumatin superfamily protein (.1) Lus10023785 [exp] 397 / 5e-141 AT5G02140 379 / 2e-133 Pathogenesis-related thaumatin superfamily protein (.1) Lus10009058 [exp] 241 / 5e-80 AT1G73620 376 / 2e-133 Pathogenesis-related thaumatin superfamily protein (.1) Lus10023897 [exp] 216 / 2e-70 AT1G75800 271 / 8e-91 Pathogenesis-related thaumatin superfamily protein (.1) Lus10032726 [exp] 214 / 2e-69 AT1G75030 334 / 5e-117 thaumatin-like protein 3 (.1) Lus10032914 [exp] 211 / 4e-68 AT5G24620 353 / 1e-121 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10028448 [exp] 209 / 6e-67 AT4G36010 332 / 9e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10041901 [exp] 208 / 2e-66 AT4G36010 329 / 2e-113 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10015591 [exp] 207 / 5e-66 AT5G24620 353 / 1e-120 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10025055 [exp] 205 / 2e-65 AT4G38660 359 / 6e-125 Pathogenesis-related thaumatin superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [poplar] [flax] CDC PF00314 [poplar] [flax] Thaumatin Thaumatin family
Representative CDS sequence Show only first row Show all	>Potri.006G088100.1 pacid=42769550 polypeptide=Potri.006G088100.1.p locus=Potri.006G088100 ID=Potri.006G088100.1.v4.1 annot-version=v4.1 ATGTCGCTGCTGTCCTTTTCATCAGTTCTCCGGCTTTCTCTTCTCCTCTACCTGCTTGCTTCATTCCCCACTACAAATGGGGAACAGCTCATATTGGTGA ATAACTGCAATGAGAGCCTATGGCCTGGAGTACTTGGTGGTGCAGGTCACTCTACGCCGAAAGATGGCGGTTTTCTTCTTGGCTGTGGTGAGGAAGTAGT CATTGATGTGCCCGACAAGTGGTCAGGGAGGATATGGGGTCGGCAAGGATGTTCCTTCGACAATGATGGAAAAGGATCATGTGACACCGGGGATTGTTCA GGCTTACTTCGCTGCCAAGGCACTGGTGGCACTCCCCCAGCAACCATGGTCGAAATGACTCTTGGATCATCTACTTCACCCTTGCATTTCTACGATGTTA GTTTAGTTGATGGCTTTAATTTGCCAGTTTCAATGGCACCAGTTGGGGGCGGAATTGGATGCGGAGTTGCATCGTGTGAAGTCGACTTAAACATATGTTG TCCATCTGCACTGGAAGTCAGGAGCAATGGCAAAATTGTGGGGTGTAAAAGTGCTTGCTTGGCTATGCAATCGGCCAAGTATTGCTGCACAGGGGATTAT GCTAACCCGAAGACTTGCAAGCCAACCCTTTTTGCCCATCTATTCAAGGCTATATGCCCAAAGGCCTATAGTTATGCCTTTGATGACTCCTCCAGCCTTA ACAAATGCAGGGCCTCGCGGTATGTTATTACCTTCTGTCCTCCTAAATGA
AA sequence Show only first row Show all	>Potri.006G088100.1 pacid=42769550 polypeptide=Potri.006G088100.1.p locus=Potri.006G088100 ID=Potri.006G088100.1.v4.1 annot-version=v4.1 MSLLSFSSVLRLSLLLYLLASFPTTNGEQLILVNNCNESLWPGVLGGAGHSTPKDGGFLLGCGEEVVIDVPDKWSGRIWGRQGCSFDNDGKGSCDTGDCS GLLRCQGTGGTPPATMVEMTLGSSTSPLHFYDVSLVDGFNLPVSMAPVGGGIGCGVASCEVDLNICCPSALEVRSNGKIVGCKSACLAMQSAKYCCTGDY ANPKTCKPTLFAHLFKAICPKAYSYAFDDSSSLNKCRASRYVITFCPPK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G02140			Pathogenesis-related thaumatin...		Potri.006G088100 [exp]	0	1
AT1G79480			Carbohydrate-binding X8 domain...		Potri.006G008200 [exp]	1.73	0.9753
AT4G37840		HKL3	hexokinase-like 3 (.1)		Potri.007G009300 [exp]	2.00	0.9732
AT1G29380			Carbohydrate-binding X8 domain...		Potri.011G078500 [exp]	3.46	0.9662
AT5G23100			Protein of unknown function, D...		Potri.015G053000 [exp]	3.46	0.9722
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Potri.003G114400 [exp]	5.56	0.9508
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Potri.006G256600 [exp]	6.70	0.9727	Pt-PME2.7
AT1G54860			Glycoprotein membrane precurso...		Potri.005G034200 [exp]	7.21	0.9743
AT5G21090			Leucine-rich repeat (LRR) fami...		Potri.001G061600 [exp]	8.18	0.9373
AT1G79480			Carbohydrate-binding X8 domain...		Potri.010G173500 [exp]	8.36	0.9722
					Potri.003G156000 [exp]	8.94	0.9471

Compare expression of checked genes

Potri.006G088100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.