Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02120 119 / 5e-36 PDE335, OHP PIGMENT DEFECTIVE 335, one helix protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023782 [exp] 143 / 2e-45 AT5G02120 121 / 8e-37 PIGMENT DEFECTIVE 335, one helix protein (.1) Lus10003965 [exp] 142 / 4e-45 AT5G02120 122 / 2e-37 PIGMENT DEFECTIVE 335, one helix protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00504 [poplar] [flax] Chloroa_b-bind Chlorophyll A-B binding protein
Representative CDS sequence Show only first row Show all	>Potri.006G088200.1 pacid=42769853 polypeptide=Potri.006G088200.1.p locus=Potri.006G088200 ID=Potri.006G088200.1.v4.1 annot-version=v4.1 ATGGCTACTCCTTCATCTCTCCTTTCATCATCTTCTCTCCTCCTCACAAAACCTGTAACACTTCACCCTCGTAACGGGAAAGTCTCTCTGTTCAACCATC GTAGTCAAATTACCAAAACCTCCAAGGAGCCGGTCTTTAGAATTCAAGCTGCAAAACTTCCTCCTGGAGTGGAATTGCCAAAAGTGGAGCCAAAATTCCA AGCCCCATTTCTTGGATTCACTAGGACTGCCGAAATATGGAATTCTAGAGCTTGTATGATGGGCCTCATTGGAGTTTTCGTTGTAGAATTGATAATAAAC AAAGGAATACTGCAAGTGATTGGGGTGGATATTGGGAAAGGTCTTGATCTTCCTCTCTGA
AA sequence Show only first row Show all	>Potri.006G088200.1 pacid=42769853 polypeptide=Potri.006G088200.1.p locus=Potri.006G088200 ID=Potri.006G088200.1.v4.1 annot-version=v4.1 MATPSSLLSSSSLLLTKPVTLHPRNGKVSLFNHRSQITKTSKEPVFRIQAAKLPPGVELPKVEPKFQAPFLGFTRTAEIWNSRACMMGLIGVFVVELIIN KGILQVIGVDIGKGLDLPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G02120		PDE335, OHP	PIGMENT DEFECTIVE 335, one hel...		Potri.006G088200 [exp]	0	1
AT5G15802			unknown protein		Potri.017G099600 [exp]	2.82	0.9629
AT4G34620		SSR16	small subunit ribosomal protei...		Potri.013G128200 [exp]	3.74	0.9663
AT2G14880			SWIB/MDM2 domain superfamily p...		Potri.001G297400 [exp]	6.00	0.9630
AT3G17470		ATCRSH	Ca2+-activated RelA/spot homol...		Potri.010G002400 [exp]	7.61	0.9503
AT4G14890		FdC2	ferredoxin C 2, 2Fe-2S ferredo...		Potri.008G153200 [exp]	9.16	0.9568
AT2G23670		YCF37	homolog of Synechocystis YCF37...		Potri.007G034300 [exp]	10.09	0.9658
AT2G33855			unknown protein		Potri.004G048400 [exp]	11.09	0.9453
AT1G26761			Arabinanase/levansucrase/inver...		Potri.008G089800 [exp]	11.53	0.9598
AT1G27480			alpha/beta-Hydrolases superfam...		Potri.014G014400 [exp]	15.49	0.9536	Pt-LCAT1.2
AT1G29070			Ribosomal protein L34 (.1)		Potri.011G064800 [exp]	16.61	0.9603

Compare expression of checked genes

Potri.006G088200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.