Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02110 166 / 3e-48 CYCD7;1 CYCLIN D7;1 (.1) AT1G70210 107 / 2e-26 ATCYCD1;1, CYCD1;1 CYCLIN D1;1 (.1) AT5G10440 104 / 1e-25 CYCD4;2 cyclin d4;2 (.1) AT3G50070 101 / 6e-24 CYCD3;3 CYCLIN D3;3 (.1) AT5G65420 99 / 2e-23 CYCD4;1 CYCLIN D4;1 (.1.2.3) AT5G67260 99 / 6e-23 CYCD3;2 CYCLIN D3;2 (.1) AT4G34160 98 / 8e-23 CYCD3;1 CYCLIN D3;1 (.1) AT2G22490 93 / 4e-21 CYCD2;1, ATCYCD2;1 Cyclin D2;1 (.1.2) AT4G37630 84 / 7e-18 CYCD5;1 cyclin d5;1 (.1.2) AT4G03270 79 / 2e-16 CYCD6;1 Cyclin D6;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G048300 [exp] 111 / 1e-27 AT5G67260 355 / 2e-121 CYCLIN D3;2 (.1) Potri.008G146600 [exp] 110 / 1e-27 AT1G70210 370 / 3e-128 CYCLIN D1;1 (.1) Potri.005G141900 [exp] 108 / 1e-26 AT5G67260 327 / 2e-110 CYCLIN D3;2 (.1) Potri.014G023000 [exp] 105 / 2e-25 AT4G34160 287 / 2e-94 CYCLIN D3;1 (.1) Potri.002G103500 [exp] 105 / 2e-25 AT2G22490 262 / 3e-85 Cyclin D2;1 (.1.2) Potri.002G123000 [exp] 104 / 3e-25 AT4G34160 280 / 1e-91 CYCLIN D3;1 (.1) Potri.010G095200 [exp] 101 / 2e-24 AT1G70210 374 / 6e-130 CYCLIN D1;1 (.1) Potri.005G157800 [exp] 100 / 1e-23 AT5G65420 228 / 2e-73 CYCLIN D4;1 (.1.2.3) Potri.007G055300 [exp] 99 / 4e-23 AT4G37630 198 / 3e-61 cyclin d5;1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023781 [exp] 208 / 2e-62 AT2G37680 352 / 9e-120 unknown protein Lus10003966 [exp] 201 / 2e-59 AT2G37680 375 / 4e-129 unknown protein Lus10029194 [exp] 117 / 5e-30 AT1G70210 367 / 2e-127 CYCLIN D1;1 (.1) Lus10010709 [exp] 115 / 5e-29 AT1G70210 375 / 4e-130 CYCLIN D1;1 (.1) Lus10014089 [exp] 111 / 2e-27 AT4G34160 332 / 2e-112 CYCLIN D3;1 (.1) Lus10019825 [exp] 110 / 3e-27 AT4G34160 332 / 4e-112 CYCLIN D3;1 (.1) Lus10011507 [exp] 97 / 1e-22 AT5G67260 343 / 7e-117 CYCLIN D3;2 (.1) Lus10019317 [exp] 97 / 2e-22 AT5G67260 338 / 4e-115 CYCLIN D3;2 (.1) Lus10027874 [exp] 95 / 2e-21 AT4G34160 226 / 6e-70 CYCLIN D3;1 (.1) Lus10018739 [exp] 94 / 4e-21 AT4G34160 237 / 3e-75 CYCLIN D3;1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [poplar] [flax] Cyclin PF00134 [poplar] [flax] Cyclin_N Cyclin, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.006G088300.4 pacid=42768270 polypeptide=Potri.006G088300.4.p locus=Potri.006G088300 ID=Potri.006G088300.4.v4.1 annot-version=v4.1 ATGGATAGCTTGCTCTGTGATGAGGTCTGGCTTTCTAGTCCTGCAACTCCCGATCACCACAATCAACCACGTTATAGCCATGGAGAGAACTACGCAGCTG CTTCCTCATTCTACACAACCAAAGAAGACTGTGAGAAGGCCGTCTCTATATACCTGGAGAAGGAGTTCACTTGCATGCCTGAACCCGGATACGTAGAACA TCTTCGGACCAAAAATCTGTTGTTTGCTAGGCTCAGAGCCATTCAGTGGCTCATCAAGTCTCGTGAAAGGCTCAGTCTCTCTTTTGAAACTGTCTTCAAC GCTGCCAATTACCTTGACCGATTCATGTCGATGAATCAGTGCCATGGATGGAAGTGTTGGATGGTTGAATTGCTGTGCGTGGCATGCTTATCAGTTGCAT CCAAATTTACTGAGACACGTACTCCTTGCTTGCATGATATTCAGATGGAAGACCTGGATCATTCATTCCAACCAATCACTATCCAGCGGATGGAATTGGT GCTGTTACGGGCTCTAGGTTGGCGCCTTGGCTCTACCACTGCATATTCTTATGTAGAGCTGCTGATGATGGAAATTGACTTCTTGAAATCTTATTCTTAC CTACAAAAGGATTTAGTTGCCTGCAGAATCACTGAGCTGCTTCTTGGAGCTATGCAAGATTGCAGCATGGTGGGATTTCGACCAAGTATAACCGCTATAT CAGCTCTCTGGTGCAGTCTAGAGGAGTTCGTTCCATCTAAATCCGATGCCCACCTTGCCCATATTAAAGGGTTGTTGAATGCTCTAGATCACAAGGATGA TGTGGTGATCAAATGCCATGGCATCATGGAAGCACAGTTAATCAATCCAGTGTACAACTTGCTAGCCTGTGGGAAGAAGCACTCCTACTGCTGTCCTTCA AGTCCTGTCACTGTTTTGCCCACGGAGCGGATTGGCATTTACGACTGCGATGTTGATCTCTCTTTCTTTAACGATTCAGGATCAAACAACAAGCAAGAAA CAAGCAAAAAGAAGCGAAAGTGGCACGAGAAATCAATTAAGGATGATGGTTTCCAGAAACGAATCAAGTAA
AA sequence Show only first row Show all	>Potri.006G088300.4 pacid=42768270 polypeptide=Potri.006G088300.4.p locus=Potri.006G088300 ID=Potri.006G088300.4.v4.1 annot-version=v4.1 MDSLLCDEVWLSSPATPDHHNQPRYSHGENYAAASSFYTTKEDCEKAVSIYLEKEFTCMPEPGYVEHLRTKNLLFARLRAIQWLIKSRERLSLSFETVFN AANYLDRFMSMNQCHGWKCWMVELLCVACLSVASKFTETRTPCLHDIQMEDLDHSFQPITIQRMELVLLRALGWRLGSTTAYSYVELLMMEIDFLKSYSY LQKDLVACRITELLLGAMQDCSMVGFRPSITAISALWCSLEEFVPSKSDAHLAHIKGLLNALDHKDDVVIKCHGIMEAQLINPVYNLLACGKKHSYCCPS SPVTVLPTERIGIYDCDVDLSFFNDSGSNNKQETSKKKRKWHEKSIKDDGFQKRIK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G02110		CYCD7;1	CYCLIN D7;1 (.1)		Potri.006G088300 [exp]	0	1
AT4G03400		GH3-10, DFL2	DWARF IN LIGHT 2, Auxin-respon...		Potri.019G103500 [exp]	3.31	0.9376	DFL2.1,GH3-11
AT3G49950	GRAS		GRAS family transcription fact...		Potri.007G119000 [exp]	3.87	0.9284
AT2G44930			Plant protein of unknown funct...		Potri.012G012000 [exp]	4.47	0.9370
AT3G48200			unknown protein		Potri.015G079000 [exp]	5.29	0.9253
AT4G08850			Leucine-rich repeat receptor-l...		Potri.015G124151 [exp]	6.48	0.8713
AT3G16030		CES101	CALLUS EXPRESSION OF RBCS 101,...		Potri.018G111900 [exp]	8.36	0.9242
					Potri.012G012100 [exp]	9.48	0.9214
AT3G22104			Phototropic-responsive NPH3 fa...		Potri.017G041600 [exp]	13.49	0.9031
AT5G67030		NPQ2, LOS6, IBS...	NON-PHOTOCHEMICAL QUENCHING 2,...		Potri.005G138400 [exp]	17.94	0.8698	Pt-ZEAEPOX.2
AT2G16720	MYB	AtY49, AtMYB7	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.018G049401 [exp]	18.00	0.8657

Compare expression of checked genes

Potri.006G088300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.