Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37710 808 / 0 RLK receptor lectin kinase (.1) AT3G53810 795 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 732 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02420 729 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 654 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT1G70110 621 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 619 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G45430 582 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT1G70130 580 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G45440 561 / 0 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G088680 [exp] 1267 / 0 AT2G37710 787 / 0.0 receptor lectin kinase (.1) Potri.006G088900 [exp] 1166 / 0 AT2G37710 801 / 0.0 receptor lectin kinase (.1) Potri.006G088632 [exp] 1159 / 0 AT2G37710 770 / 0.0 receptor lectin kinase (.1) Potri.006G088400 [exp] 1152 / 0 AT2G37710 800 / 0.0 receptor lectin kinase (.1) Potri.006G088648 [exp] 1023 / 0 AT2G37710 710 / 0.0 receptor lectin kinase (.1) Potri.006G088801 [exp] 938 / 0 AT3G53810 662 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G036300 [exp] 689 / 0 AT3G53810 630 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G244000 [exp] 688 / 0 AT3G53810 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G035500 [exp] 676 / 0 AT3G53810 598 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003224 [exp] 839 / 0 AT3G53810 781 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10008597 [exp] 833 / 0 AT3G53810 771 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10035627 [exp] 819 / 0 AT2G37710 755 / 0.0 receptor lectin kinase (.1) Lus10029315 [exp] 803 / 0 AT3G53810 758 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040774 [exp] 699 / 0 AT3G53810 713 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016507 [exp] 696 / 0 AT3G53810 705 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004982 [exp] 672 / 0 AT3G53810 664 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10001562 [exp] 663 / 0 AT3G53810 655 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016506 [exp] 650 / 0 AT3G53810 651 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10001564 [exp] 639 / 0 AT3G53810 639 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0004 [poplar] [flax] Concanavalin PF00139 [poplar] [flax] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Potri.006G088600.1 pacid=42769219 polypeptide=Potri.006G088600.1.p locus=Potri.006G088600 ID=Potri.006G088600.1.v4.1 annot-version=v4.1 ATGTTATTCAGAATTGTCTTAATGGTGCGTGTCTTATTTAGCTTAGCAATAGCAGCCTCTCAAGAACTCAACTTCAACTTCAACTTCACCTACTCTGGCT TCCGATCCACTAATCTAAGCCTTGACGGCTTAGCTGAGTTAACCTCCAATGGCCTTTTGAGGCTAACCAATGAAACCAAGCAACGAACGAGTCACGCCTT CTATCCAAACCCAGTAACCTTCAAGAACTCTATAAATAGCACTGCTTTCACCTTCTCCACTACCTTTGTTTTCGCTATCATACCTGAATATCCAACTCTT GGTGGCCATGGTATTGCCTTTGTCATTGCACCCACAAGAGGTCTCCCAGGAGCTCTTCCAAGCCAGTACCTTGGTCTATTTAATAAGACCAACAATGGGA ATCAGACCAACCATGTTGTTGCTGTGGAGCTTGACACGATATACAGCAGCGAGTTCAATGATATCGATGATAACCATGTTGGGATTGATATTAATGGTTT AGAGTCTGAACGATCTGCTTCAGCAGGATATTATTCTCAACTTAATGGTAAGCTCACAAACTTGACACTAATTAGTGGCCATCCAATGCAAGTTTGGATG GAATATGATGGCAAGGAGAAGCAACTTGATGTCACTATAGCTCCGATTGATGTTGATAAACCCAGTAGACCACTTTTGACTCTGTCTTGTGATTTGTCGC CAATCTTAAACAGTAGTATGTATATCGGATTCTCATCATCCACCGGTTCTGTTTTCACGTCCCATTATGTGTTGGGCTGGAGCTTCAAGATGAATGGCCT AGCTGAAGCACTACATATCTCTCGCCTTCCTAAGCTTCCTCGAGTAGGACCAAAGAAGACATCCAAATTCTTAACCATTGAACTTCCTGTGCTTTGTTTA AGTTTGGTTTTAGTAGCAGTCTCGAGTACATCTTATGCCATACGAAGGACAAGGAAGTTTGCAGAAGTGCTAGAAGATTGGGAGCTTGACTATGGGCCTC ACCGATTTAAATACAAAGATCTTTATACTGCCACCAAAGGATTTAGAGACGAGGAGCTGTTGGGTAGTGGTGGGTTTGGTAGAGTCTACAAAGGTGTCTT GCCAACCTCTAAGATTCAGATTGCAGTGAAAAGGGTGTCTCATGAATCAAGACAGGGGATGAGGGAATTTGTGGCGGAAATTGTCAGCATTGGTCGCCTT CGTCACCGGAATTTAGTCCCTCTCTTGGGGTACTGCCGGCGTAGAGGAGAGCTACTTTTGGTATATGACTACATGCCTAATGGAAGTTTAGACAAATACC TCTATGACCAACCAACAGTCGCCCTCAATTGGAGCCAAAGATTTAGAGTCATCAATGGCGTAGCTTCAGGGCTATTTTATCTACATGAAGAATGGGAGCA AGTTGTGATTCATAGAGATGTCAAGGCTAGTAATGTCTTGCTAGATGGTGAATTGAATGGAAGATTAGGGGATTTTGGCCTTGCAAGATTGTATGACCAT GGAACAGATCCTCAAACGACCCACGTTGTCGGAACTCTTGGGTATCTCGCACCTGAGCATGCACGAACTGGAAAGGCCACGACAAGCACTGATGTGTTCG CTTTTGGGGCCTTCTTGCTTGAGGTTGCTTCTGGTAGAAGGCCAATACAGCCAACTGAGGATATAATCTTGGTTGATTGGGTGTTTAGTCGATGGCTTGG AGGTGAAATTCTGGAGGCAAGGGATCCCAATTTGGGTACAGAATATATTGCAGAGGAAATGGAATTGGTATTGAAACTTGGTTTGATGTGCTCTCATTCT GAGCCTGCAGCAAGGCCAAGCATGCGCCAAGTAGTGCAGTTCTTAGAGGGGGATGTTCCTCTGCCTGACATTTCACCACTTTGTCTTTCTGCAAGTGGCC TAACATTTTCACATCGTGAAGGTTTTGATGAGTTTGCCAATTCATATCCTTCTTCTATGGACCAGGCATTTGGACATTCGTCCTCGGTTACAGAGTCCCT CCTTTCAGGTGGCCGTTAA
AA sequence Show only first row Show all	>Potri.006G088600.1 pacid=42769219 polypeptide=Potri.006G088600.1.p locus=Potri.006G088600 ID=Potri.006G088600.1.v4.1 annot-version=v4.1 MLFRIVLMVRVLFSLAIAASQELNFNFNFTYSGFRSTNLSLDGLAELTSNGLLRLTNETKQRTSHAFYPNPVTFKNSINSTAFTFSTTFVFAIIPEYPTL GGHGIAFVIAPTRGLPGALPSQYLGLFNKTNNGNQTNHVVAVELDTIYSSEFNDIDDNHVGIDINGLESERSASAGYYSQLNGKLTNLTLISGHPMQVWM EYDGKEKQLDVTIAPIDVDKPSRPLLTLSCDLSPILNSSMYIGFSSSTGSVFTSHYVLGWSFKMNGLAEALHISRLPKLPRVGPKKTSKFLTIELPVLCL SLVLVAVSSTSYAIRRTRKFAEVLEDWELDYGPHRFKYKDLYTATKGFRDEELLGSGGFGRVYKGVLPTSKIQIAVKRVSHESRQGMREFVAEIVSIGRL RHRNLVPLLGYCRRRGELLLVYDYMPNGSLDKYLYDQPTVALNWSQRFRVINGVASGLFYLHEEWEQVVIHRDVKASNVLLDGELNGRLGDFGLARLYDH GTDPQTTHVVGTLGYLAPEHARTGKATTSTDVFAFGAFLLEVASGRRPIQPTEDIILVDWVFSRWLGGEILEARDPNLGTEYIAEEMELVLKLGLMCSHS EPAARPSMRQVVQFLEGDVPLPDISPLCLSASGLTFSHREGFDEFANSYPSSMDQAFGHSSSVTESLLSGGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37710		RLK	receptor lectin kinase (.1)		Potri.006G088600 [exp]	0	1
AT2G37710		RLK	receptor lectin kinase (.1)		Potri.006G088680 [exp]	1.00	0.9988
AT1G47510		AT5PTASE11, 5PT...	ARABIDOPSIS THALIANA INOSITOL ...		Potri.014G039800 [exp]	4.47	0.9288
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Potri.017G032700 [exp]	6.00	0.9445
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Potri.017G032766 [exp]	6.24	0.9436
AT1G05010		ACO4, EAT1, EFE	ethylene forming enzyme, ethyl...		Potri.014G159000 [exp]	7.00	0.9320	Pt-ACO1.4
AT1G79510			Uncharacterized conserved prot...		Potri.010G173000 [exp]	7.48	0.9378
AT2G45400		BEN1	NAD(P)-binding Rossmann-fold s...		Potri.006G087200 [exp]	9.48	0.9372	Pt-DFR1.3
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Potri.005G177700 [exp]	9.79	0.9034	ENOD8.3
AT5G36930			Disease resistance protein (TI...		Potri.013G097050 [exp]	10.39	0.9349
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Potri.002G028700 [exp]	10.95	0.9319	VFCYSPRO.1

Compare expression of checked genes

Potri.006G088600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.