Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37710 710 / 0 RLK receptor lectin kinase (.1) AT3G53810 709 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 660 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02420 649 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 615 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT1G70110 596 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 572 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G45430 549 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT5G59260 527 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT1G70130 526 / 0 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G088600 [exp] 1026 / 0 AT2G37710 808 / 0.0 receptor lectin kinase (.1) Potri.006G088680 [exp] 1025 / 0 AT2G37710 787 / 0.0 receptor lectin kinase (.1) Potri.006G088900 [exp] 1023 / 0 AT2G37710 801 / 0.0 receptor lectin kinase (.1) Potri.006G088400 [exp] 1005 / 0 AT2G37710 800 / 0.0 receptor lectin kinase (.1) Potri.006G088632 [exp] 993 / 0 AT2G37710 770 / 0.0 receptor lectin kinase (.1) Potri.006G088801 [exp] 946 / 0 AT3G53810 662 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.003G196600 [exp] 630 / 0 AT4G29050 663 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G036300 [exp] 618 / 0 AT3G53810 630 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G035500 [exp] 613 / 0 AT3G53810 598 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003224 [exp] 763 / 0 AT3G53810 781 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10008597 [exp] 748 / 0 AT3G53810 771 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10035627 [exp] 743 / 0 AT2G37710 755 / 0.0 receptor lectin kinase (.1) Lus10029315 [exp] 727 / 0 AT3G53810 758 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040774 [exp] 642 / 0 AT3G53810 713 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016507 [exp] 642 / 0 AT3G53810 705 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004982 [exp] 608 / 0 AT3G53810 664 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10001562 [exp] 602 / 0 AT3G53810 655 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016506 [exp] 599 / 0 AT3G53810 651 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040276 [exp] 590 / 0 AT3G55550 750 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0004 [poplar] [flax] Concanavalin PF00139 [poplar] [flax] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Potri.006G088648.1 pacid=42768213 polypeptide=Potri.006G088648.1.p locus=Potri.006G088648 ID=Potri.006G088648.1.v4.1 annot-version=v4.1 ATGTTATTCAGGATCGTCTTTTTGGTGCGTGTCTTCGTTAGCTTAGCAATAGCAGCCTCTCAAGATCTCAACTTCACCTTCTCTGGCTTCCGATCTACTA ATCTAAGCCTTGACGGCTTAGCTGAGTTAACCTCCAATGGCCTTTTGAGGCTAACCAATGAAACCAAGCTACGAACTAGTCACGCCTTCTATCCAAACCC AGTAACCTTCAAGAACTCTATAAATAGCACTGCTTTCACCTTCTCCACTGCCTTTGTTTTCGCTATCATACCTGAATATGCAAGTTTTGGTGGCCATGGT ATTGCCTTTGTCATTGCACCCACAAGAGGTCTCCCAGGAGCTCTTCCAAGCCAGCACCTTGGTCTATTTAATGAGACCAACAATGGGAATCAGACCAACC ATGTTGTTGCTGTGGAGCTTGACACGATATACAACAGCGATTTCAATGATATCAATGATAACCATGTTGGGATTGATATTAATGGTTTAGTGTCTGAACG ATCTGCTTCAGCTGGATATTATTCTCAACTTAATGGTAAGCTCACAAACTTGACGCTAAGTAGTGGCCATCCAATGCAAGTTTGGATGGAATATGATGGC ATGGAGAAGCAATTTAATGTCACTATAGCTCCGATTGATGTTGATAAACCCAGTCGACCACTTTTGACTTTGTCTTGTGATTTGTCGCCAATCTTAAACA GTAGTATGTATATCGGATTCTCATCGTCTACCGGTTCTGTTTTAGCGTCCCAGTATGTGTTGGGTTGGAGCTTCAAGATGAATGGCCTAGCTAAAGGACT AAATATCTCTCGCCTTCCTAAGCTTCCTCGAGTAGGACCAAAGAAGACATCCAAATTCTTAACCATTGGACTGCCTGTGCTTTGTTTAAGTTTGGTTTTA GTAGCGGTCTCGAGTATTTCTTATGCCATACGAAGGGCAAGGAAGTTTGCAGAAGTGCTAGAAGATTGGGAGCTTGACTATGGGCCTCACCGATTTAAAC TCAAAGATCTTTATACTGCCACCAAAGGATTTAGAGACGAGGAGCAGTTGGGTAGTGGTGGATTTGGTAGAGTCTACAAAGGTGTCTTGCCAACCTCTAA GATTCAGATTGCAGTGAAAAGGGTGTCTCATGAATCAAGACAGGGGATGAGGGAATTTGTGGCGGAAATTGTCAGCATTGGTCGCCTTCGCCACCGGAAT TTAGTCCCTCTCTTGGGGTACTGCCGGCGTAAAGGAGAGCTACTTTTGGTATATGACTACATGCCTAATGGAAGTTTAGACAAATACCTCTATGACCAAC CAACAGTCGCCCTCAATTGGAGCCAAAGATTTAGAGTCATCAAAGGCGTAGCTTCAGGGCTATTTTATCTGCATGAAGAATGGGAGCAAGTTGTGGTTCA TAGAGATGTCAAGGCAAGTAATGTCTTGCTAGATGGTGAATTGAATGGAAGATTAGGGGATTTTGGCCTTGCAAGATTGTATGACCATGGAACAGATCCT CAAACGACCCACGTTGTCGGAACTCTTGGGTATCTCGCACCTGAGCATGCACGAACTGGAAAGGCCACGACAAGCACTGATGTGTTCGCTTTTGGGGCCT TCTTGCTTGAGGTTGCTTCTGGTAGAAGGCCAATACAGCCAACTGAGGATATAATCTTGGTTGATTGGGTGTTTAGTCGATGGCTTGGAGGTGAAATTCT GGAGGCAAGGGATCCCAATTTGGGTACAGAATATATTGCATAG
AA sequence Show only first row Show all	>Potri.006G088648.1 pacid=42768213 polypeptide=Potri.006G088648.1.p locus=Potri.006G088648 ID=Potri.006G088648.1.v4.1 annot-version=v4.1 MLFRIVFLVRVFVSLAIAASQDLNFTFSGFRSTNLSLDGLAELTSNGLLRLTNETKLRTSHAFYPNPVTFKNSINSTAFTFSTAFVFAIIPEYASFGGHG IAFVIAPTRGLPGALPSQHLGLFNETNNGNQTNHVVAVELDTIYNSDFNDINDNHVGIDINGLVSERSASAGYYSQLNGKLTNLTLSSGHPMQVWMEYDG MEKQFNVTIAPIDVDKPSRPLLTLSCDLSPILNSSMYIGFSSSTGSVLASQYVLGWSFKMNGLAKGLNISRLPKLPRVGPKKTSKFLTIGLPVLCLSLVL VAVSSISYAIRRARKFAEVLEDWELDYGPHRFKLKDLYTATKGFRDEEQLGSGGFGRVYKGVLPTSKIQIAVKRVSHESRQGMREFVAEIVSIGRLRHRN LVPLLGYCRRKGELLLVYDYMPNGSLDKYLYDQPTVALNWSQRFRVIKGVASGLFYLHEEWEQVVVHRDVKASNVLLDGELNGRLGDFGLARLYDHGTDP QTTHVVGTLGYLAPEHARTGKATTSTDVFAFGAFLLEVASGRRPIQPTEDIILVDWVFSRWLGGEILEARDPNLGTEYIA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37710		RLK	receptor lectin kinase (.1)		Potri.006G088648 [exp]	0	1
AT2G37710		RLK	receptor lectin kinase (.1)		Potri.006G088900 [exp]	2.82	0.9435
AT1G21790			TRAM, LAG1 and CLN8 (TLC) lipi...		Potri.002G083300 [exp]	3.00	0.9501
AT1G18810			phytochrome kinase substrate-r...		Potri.015G062600 [exp]	6.70	0.9452
AT2G24270		ALDH11A3	aldehyde dehydrogenase 11A3 (....		Potri.006G186800 [exp]	9.59	0.9457	Pt-ALDH11.2
AT3G56710		SIB1	sigma factor binding protein 1...		Potri.016G036600 [exp]	15.36	0.8976
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125351 [exp]	16.52	0.9308
AT1G50320		ATHX, ATX	thioredoxin X (.1)		Potri.007G074000 [exp]	18.30	0.9395
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.003G211932 [exp]	18.49	0.9052
AT4G23660		ATPPT1	polyprenyltransferase 1 (.1.2....		Potri.005G093600 [exp]	22.97	0.9027
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Potri.001G312300 [exp]	27.92	0.9195

Compare expression of checked genes

Potri.006G088648 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.