Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53810 662 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 662 / 0 RLK receptor lectin kinase (.1) AT4G02410 612 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02420 598 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 593 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT1G70110 554 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 528 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G45430 509 / 1e-174 Concanavalin A-like lectin protein kinase family protein (.1) AT5G59260 504 / 7e-173 Concanavalin A-like lectin protein kinase family protein (.1) AT3G59700 499 / 7e-171 LECRK1, ATHLECRK LECTIN-RECEPTOR KINASE 1, lectin-receptor kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G088648 [exp] 931 / 0 AT2G37710 710 / 0.0 receptor lectin kinase (.1) Potri.006G088600 [exp] 920 / 0 AT2G37710 808 / 0.0 receptor lectin kinase (.1) Potri.006G088900 [exp] 919 / 0 AT2G37710 801 / 0.0 receptor lectin kinase (.1) Potri.006G088680 [exp] 919 / 0 AT2G37710 787 / 0.0 receptor lectin kinase (.1) Potri.006G088400 [exp] 917 / 0 AT2G37710 800 / 0.0 receptor lectin kinase (.1) Potri.006G088632 [exp] 913 / 0 AT2G37710 770 / 0.0 receptor lectin kinase (.1) Potri.009G036300 [exp] 583 / 0 AT3G53810 630 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G035500 [exp] 579 / 0 AT3G53810 598 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.003G196600 [exp] 578 / 0 AT4G29050 663 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003224 [exp] 694 / 0 AT3G53810 781 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10008597 [exp] 678 / 0 AT3G53810 771 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10035627 [exp] 672 / 0 AT2G37710 755 / 0.0 receptor lectin kinase (.1) Lus10029315 [exp] 666 / 0 AT3G53810 758 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040774 [exp] 595 / 0 AT3G53810 713 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016507 [exp] 594 / 0 AT3G53810 705 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004982 [exp] 569 / 0 AT3G53810 664 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016506 [exp] 563 / 0 AT3G53810 651 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10001562 [exp] 562 / 0 AT3G53810 655 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10001564 [exp] 559 / 0 AT3G53810 639 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [poplar] [flax] Concanavalin PF00139 [poplar] [flax] Lectin_legB Legume lectin domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.006G088801.1 pacid=42768344 polypeptide=Potri.006G088801.1.p locus=Potri.006G088801 ID=Potri.006G088801.1.v4.1 annot-version=v4.1 ATGTTATTCAGGATCGTCTTCTTGGTGCGTGTCTTAGTTAGCTTAGCAATAGCAGCCTCTCAAGATCTCAACTTCACCTTCTCTGGCTTCCGATCCACTA ATCTAAGCCTTGACGGCTTAGCTGAGTTAACCTCCAATGGCCTTTTGAGGCTAACCAATGAAACCAAGCAACGAACGGGTCACGCCTTCTATCCAAACCC AGTAACCTTCAAGAACTCTATAAATAGCACTGCTTTCACCTTCTCCACTGCCTTTGTTTTCGCTATCATACCTGAATATGCAACTCTTGGTGGCCATGGT ATTGCCTTTGTCATTGCACCCACAAGAGGTCTCCCAGGAGCTCTTCCAAACCAGCACCTTGGTCTATTTAATAACACCAACAATGGGAAACAGACCAACC ATGTTGTTGCTGTGGAGCTTGACACGATATACAACAGCGAGTACAATGATATCAATGACAACCATGTTGGGATTGATATTAATGATTTAGACTCTGAACG ATCTGCTTCAGCAGGATATTATTCTCAACTTAATGGTAAGCTCACAAACTTGACACTAATTAGTGGCCATCCAATGCAAGTTTGGATGGAATATGATGGC ATGGAGAAGCAACTGAATGTCACTATAGCTCCGATTGATGTTGATAAACCCAGTAGACCACTTTTGACTCTGTCTCGTGATTTGTCGCCAATCTTAAACA GTAGTATGTATATTGGATTCTCATCATCCACTAGTAATTCATATTTCGCGTCCCAGTACGTGTTGGGTTGGAGCTTCAAGATGAATGGCCTAGCTGAAGC AGTAGATATCTCTCGCCTTCCTAAGCTTCCTCGTGTAGGACCAAAGAAGACATCCAAATTCTTAACCATTGGACTGCCTGTGCTTTGTTTAAGTTTGGTT TTAGTAGCAGTCTCGAGTATATCTTATGCCATACGATGGACAAGGAAGTTTGCAGAAGTGCTAGAAGATTGGGAGCTTGACTATGGGCCTCACCGATTTA AATTCAAAGATCTTTATACTGCCACCAAAGGATTTAGAGACGAGGAGCTGTTGGGTAGTGGTGGATTTGGCAGAGTCTACAAAGGTGTCTTTCCAACGTC TAAGATTCAGATTGCAGTGAAAAGGTTGTCTCATGATTCAAGACAGGGGATGAGGGAATTTGTGGCCGAAATTGTCAGCATTGGTCGTCTTCGTCACCGG AATTTAGTCCCTCTCTTGGGGTACTGCCGGCGTAAAGGAGAGCTACTTTTGGTATATGACTACATGCCTAATGGAAGTTTAGACAAATACCTCTATGACC ATCCAACTGTCGCCCTCAATTGGAGCCAAAGATTTAGAATCATCAAAGGCGTAGCTTCAGGGCTATTTTATCTACATGAAGAATGGGAGCAAGTTGTGGT TCATAGAAATGTCAAGGCTAGTAATGTCTTGCTAGATGGTGAATTGAATGGAAGATTAGGGGATTTTGGCCTTGCAAGATTGTATGACCATGGAACAGAT CCTCAAACGACCCACGTTGTCGGAACTCTTGGGTATCTCGCACCTGAACATGCACGAACTGGAAAGGCCACGACAAGCACTGATGTGTTCGCTTTTGGGG CCTTCTTGCTTGAGGTTGCTTCTGGTAGAAGGCCAATATAA
AA sequence Show only first row Show all	>Potri.006G088801.1 pacid=42768344 polypeptide=Potri.006G088801.1.p locus=Potri.006G088801 ID=Potri.006G088801.1.v4.1 annot-version=v4.1 MLFRIVFLVRVLVSLAIAASQDLNFTFSGFRSTNLSLDGLAELTSNGLLRLTNETKQRTGHAFYPNPVTFKNSINSTAFTFSTAFVFAIIPEYATLGGHG IAFVIAPTRGLPGALPNQHLGLFNNTNNGKQTNHVVAVELDTIYNSEYNDINDNHVGIDINDLDSERSASAGYYSQLNGKLTNLTLISGHPMQVWMEYDG MEKQLNVTIAPIDVDKPSRPLLTLSRDLSPILNSSMYIGFSSSTSNSYFASQYVLGWSFKMNGLAEAVDISRLPKLPRVGPKKTSKFLTIGLPVLCLSLV LVAVSSISYAIRWTRKFAEVLEDWELDYGPHRFKFKDLYTATKGFRDEELLGSGGFGRVYKGVFPTSKIQIAVKRLSHDSRQGMREFVAEIVSIGRLRHR NLVPLLGYCRRKGELLLVYDYMPNGSLDKYLYDHPTVALNWSQRFRIIKGVASGLFYLHEEWEQVVVHRNVKASNVLLDGELNGRLGDFGLARLYDHGTD PQTTHVVGTLGYLAPEHARTGKATTSTDVFAFGAFLLEVASGRRPI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G53810			Concanavalin A-like lectin pro...		Potri.006G088801 [exp]	0	1
AT2G37710		RLK	receptor lectin kinase (.1)		Potri.006G088632 [exp]	1.41	0.9732
AT1G08280			Glycosyltransferase family 29 ...		Potri.009G144000 [exp]	2.00	0.9634
AT2G37710		RLK	receptor lectin kinase (.1)		Potri.006G088400 [exp]	2.82	0.9549
AT5G03555			permease, cytosine/purines, ur...		Potri.006G119500 [exp]	3.00	0.9576
AT2G19130			S-locus lectin protein kinase ...		Potri.013G149500 [exp]	5.19	0.9300
AT5G59030		COPT1	copper transporter 1 (.1)		Potri.009G038800 [exp]	7.48	0.9374	COPT1.2
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.018G135300 [exp]	8.66	0.9450
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.018G135001 [exp]	14.69	0.9320
AT1G07230		NPC1	non-specific phospholipase C1 ...		Potri.009G045100 [exp]	23.87	0.9077
AT2G37710		RLK	receptor lectin kinase (.1)		Potri.006G088900 [exp]	24.14	0.8993

Compare expression of checked genes

Potri.006G088801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.