Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37730 625 / 0 Protein of unknown function (DUF604) (.1) AT3G11420 451 / 5e-155 Protein of unknown function (DUF604) (.1) AT5G41460 400 / 7e-135 Protein of unknown function (DUF604) (.1) AT4G23490 388 / 6e-130 Protein of unknown function (DUF604) (.1) AT4G11350 383 / 2e-128 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) AT1G01570 378 / 6e-127 Protein of unknown function (DUF604) (.1) AT1G07850 360 / 7e-119 Protein of unknown function (DUF604) (.1) AT4G15240 349 / 2e-115 Protein of unknown function (DUF604) (.1) AT4G00300 353 / 1e-113 fringe-related protein (.1.2) AT1G33250 344 / 8e-113 Protein of unknown function (DUF604) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G101200 [exp] 915 / 0 AT2G37730 618 / 0.0 Protein of unknown function (DUF604) (.1) Potri.010G199900 [exp] 510 / 4e-178 AT3G11420 481 / 7e-167 Protein of unknown function (DUF604) (.1) Potri.008G058900 [exp] 508 / 2e-177 AT3G11420 493 / 1e-171 Protein of unknown function (DUF604) (.1) Potri.009G026300 [exp] 400 / 3e-135 AT1G07850 637 / 0.0 Protein of unknown function (DUF604) (.1) Potri.003G131400 [exp] 393 / 4e-132 AT5G41460 732 / 0.0 Protein of unknown function (DUF604) (.1) Potri.001G100700 [exp] 392 / 1e-131 AT4G23490 757 / 0.0 Protein of unknown function (DUF604) (.1) Potri.012G107800 [exp] 389 / 8e-131 AT4G23490 546 / 0.0 Protein of unknown function (DUF604) (.1) Potri.011G147300 [exp] 373 / 4e-124 AT1G33250 648 / 0.0 Protein of unknown function (DUF604) (.1) Potri.017G039600 [exp] 359 / 1e-119 AT1G05280 479 / 3e-167 Protein of unknown function (DUF604) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002713 [exp] 444 / 2e-152 AT3G11420 460 / 5e-159 Protein of unknown function (DUF604) (.1) Lus10024364 [exp] 413 / 8e-143 AT2G37730 405 / 1e-139 Protein of unknown function (DUF604) (.1) Lus10018123 [exp] 385 / 7e-129 AT5G41460 589 / 0.0 Protein of unknown function (DUF604) (.1) Lus10032293 [exp] 382 / 9e-128 AT4G23490 740 / 0.0 Protein of unknown function (DUF604) (.1) Lus10017514 [exp] 376 / 2e-125 AT5G41460 759 / 0.0 Protein of unknown function (DUF604) (.1) Lus10036382 [exp] 368 / 4e-122 AT4G11350 580 / 0.0 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) Lus10027153 [exp] 347 / 2e-114 AT1G05280 479 / 4e-167 Protein of unknown function (DUF604) (.1) Lus10010869 [exp] 328 / 3e-110 AT2G37730 305 / 2e-101 Protein of unknown function (DUF604) (.1) Lus10008293 [exp] 335 / 2e-109 AT1G33250 611 / 0.0 Protein of unknown function (DUF604) (.1) Lus10039692 [exp] 328 / 2e-107 AT1G05280 476 / 3e-166 Protein of unknown function (DUF604) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF02434 [poplar] [flax] Fringe Fringe-like
Representative CDS sequence Show only first row Show all	>Potri.006G089150.1 pacid=42770335 polypeptide=Potri.006G089150.1.p locus=Potri.006G089150 ID=Potri.006G089150.1.v4.1 annot-version=v4.1 ATGTCATCTCCAACACCATCTATTCAAGATCCTTTCAAAGCTTGGAAATTCTTGGTTTTGCCGACGTTAAAAGTCAGTGATGTCTTTTCTTTATTTCTAA AAGCAACCATAGCTATTTGCACCTTCGTTTCAATCTCCCTCGTATTCTACTCCTTCCTCAATCAATCTCAATGGCAACCTTGCCCAGAATGCCACAAGAG TTTAATCTCTGATCACAGGAAGATAACAAACGGTAATGTTTCTGGTGATTTCTATGAGAAGACAAATATTTCACACATTTTATTCGGCATTGGTGGCTCC GCAAAGACTTGGAATAAACGCAGGCACTATACTGAGCTATGGTGGATGCCTAAGATCACCCGTGGCTATGTCTGGCTCGACCAGAAGCCTCCAGAGAATA GAACGTGGCCAGAAACTTCACCCGAGTACAAAGTCTCAGCCGACACGTCACGGTTCAAGTACACCTGCTCGTATGGCTCTCGGTCAGCGCTACGGATTGC GCGGATAGTGAAGGAGAGCTTTGAATTAGGAGAGGAAAATGTGAGATGGTTCGTGATGGGAGATGATGATACAGTATTTTTCATAGAGAATTTGGTAATG GTATTAGCAAAATATGATCACAATCAGATGTATTACATCGGCGGCAATTCGGAGAGTGTTGAGCAAGATGTGATACATTCATATACAATGGCATACGGTG GTGGTGGGTTTGCTATTAGTTATCCACTAGCAAAAGAACTCGTCAGGGTTTTGGATGGCTGTATTGATCGATACGCGTCGTTTTACGGCTCTGATCAGAA AATTCAGGGTTGCATGAGTGAGATTGGAGTTCCTCTTACTAAAGAGCTCGGATTCCATCAGGTTGATATAAGAGGAGATCCATATGGTTTACTGGCAGCG CACCCATTGGCGCCATTGGTGTCCTTGCACCATCTAGACTACGTCCAGTCAATATTTCCAAAGCTGAACCGCATTGACTCAGTCAAGAAGTTAATATCTT CTTATAAAATGGATCCGGGTCGGGCTTTACAATATAGTTTTTGTTATGATTTGACGCGTAATTGGTCTGTTTCAGCATCTTGGGGTTACACCATACAGAT ACATCCTTCTTTGATGACGGCAAAGCAGTTGGAATCCGCGTTCAGAACGTTTCAGACGTGGAGGAGTTGGAGCAATGGACCGTTCACATTTAACACCCGA CCCATGAGTCAACATCCGTGTCTAAGACCAGTTGTGTATTTCTTGGATCGGGTTGAAAGAGTCGGGGATGGTACATTGACCACGTATAAAAGGTCTCTGC AAGAGTTTGGTCAAGTTTGCGACCTACCGGAGTATGCTCCAGTTTTGGCCGTCAAGTTAGTCAATGTCACAACTTCTACATCGTTGAAACCTGACATTTG GAATTTGGCACCACGTAGACAGTGCTGCGAAGTAATCAAGGGAGAAGACGGGGTGAACAGCGTGGTACAGCTCAACATTAGAGGGTGCAATCAGTTTGAG AGCGTGACTCCTCCATAG
AA sequence Show only first row Show all	>Potri.006G089150.1 pacid=42770335 polypeptide=Potri.006G089150.1.p locus=Potri.006G089150 ID=Potri.006G089150.1.v4.1 annot-version=v4.1 MSSPTPSIQDPFKAWKFLVLPTLKVSDVFSLFLKATIAICTFVSISLVFYSFLNQSQWQPCPECHKSLISDHRKITNGNVSGDFYEKTNISHILFGIGGS AKTWNKRRHYTELWWMPKITRGYVWLDQKPPENRTWPETSPEYKVSADTSRFKYTCSYGSRSALRIARIVKESFELGEENVRWFVMGDDDTVFFIENLVM VLAKYDHNQMYYIGGNSESVEQDVIHSYTMAYGGGGFAISYPLAKELVRVLDGCIDRYASFYGSDQKIQGCMSEIGVPLTKELGFHQVDIRGDPYGLLAA HPLAPLVSLHHLDYVQSIFPKLNRIDSVKKLISSYKMDPGRALQYSFCYDLTRNWSVSASWGYTIQIHPSLMTAKQLESAFRTFQTWRSWSNGPFTFNTR PMSQHPCLRPVVYFLDRVERVGDGTLTTYKRSLQEFGQVCDLPEYAPVLAVKLVNVTTSTSLKPDIWNLAPRRQCCEVIKGEDGVNSVVQLNIRGCNQFE SVTPP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37730			Protein of unknown function (D...		Potri.006G089150 [exp]	0	1
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.016G046500 [exp]	7.74	0.8347
					Potri.017G047400 [exp]	9.79	0.8625
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Potri.004G083300 [exp]	10.48	0.8205	Pt-SKOR.3
AT1G65680		ATHEXPBETA1.4, ...	expansin B2 (.1)		Potri.014G066300 [exp]	12.96	0.8203	PtrEXPB1,Pt-EXPB4.1
AT5G01950			Leucine-rich repeat protein ki...		Potri.016G140300 [exp]	13.74	0.8423
AT5G16770	MYB	ATMYB9	myb domain protein 9 (.1.2)		Potri.019G050900 [exp]	16.97	0.8677	MYB101.1
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Potri.014G120000 [exp]	28.91	0.8037
AT5G41040			HXXXD-type acyl-transferase fa...		Potri.001G326300 [exp]	32.24	0.8467
AT3G22600			Bifunctional inhibitor/lipid-t...		Potri.002G050300 [exp]	34.05	0.8483
AT2G23620		ATMES1	ARABIDOPSIS THALIANA METHYL ES...		Potri.007G037700 [exp]	34.17	0.8446	HNL.2

Compare expression of checked genes

Potri.006G089150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.